ATIDB : The Arabidopsis thaliana Integrated Database

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Names and Synonyms

AT5G42960.1
AT5G42960
MBD2.16
MBD2_16

Gene Ontology Terms

GO:0005554 [AMIGO Graph]
Term : molecular_function, molecular function unknown
Definition : Used for the annotation of gene products whose function is not known or cannot be inferred.

GO:0000004 [AMIGO Graph]
Term : biological_process, biological process unknown
Definition : Used for the annotation of gene products whose process is not known or cannot be inferred.

GO:0008372 [AMIGO Graph]
Term : cellular_component, cellular component unknown
Definition : Used for the annotation of gene products whose localization is not known or cannot be inferred.

MIPS Functional Catalogue Classifications

[99] UNCLASSIFIED PROTEINS


Gene Predictions [*]

Functional Class Prediction Accuracy (%age) Predicted by rule
[GO:0003824] catalytic activity 821/1036 79.25 [Seq GOmanual 1 - Rule470]
[GO:0000166] nucleotide binding 7/9 77.78 [Seq GOmanual 2 - Rule1424]


Gene Insertions

Flanking Sequence : T-DNA_LB.FLAG.342H09 [Graphical View|Text]
Location : chromosome 5, base 17253389-17253390
Mapping Score 5 [see FAQ]


Design Validation Primers

Automatically design primers for insert validation

InterProScan results


Sequences

AT5G42960.1 Sequences

AT5G42960.1, Protein sequence 213 amino acids
MAMKASIKGKYDTDKTSGIGSLAFNAGDIKLRATMTDATLVAGPTLTGLALAVEKPGSFI
VEYNVPKKDVRFQFMNTVRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGT
NNCKIKYTYAHGGLATFEPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEWSRN
NKASGFKVCASVNLADELKTPKLTAETTWNLEM*
AT5G42960.1 Sequence 1567 bases
GCCGCTCTCACCGAACCTCTGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTACTGTGCGAAAATGGCGAT
GAAGGCTTCTATCAAAGGCAAGTACGATACTGACAAAACCAGTGGAATCGGTTCACTTGCTTTCAACGCCGGCGATATTAAGCTACGCGCCACCATGACC
GATGCTACTCTCGTCGCCGGTCCTACTTTGACCGGTCTCGCTCTCGCTGTAGAGAAGCCTGGTTCCTTCATCGTCGAGTACAACGTCCCTAAAAAGGTCA
GAACAACTCTTTTGATTTGAGTCAAAGCAAACAAATCTTAGAAATTTTTCAATTCCCATGGAAATGAGATTGATTGCTTACGATTAAACCTAGGATTCAA
GTCAAAGCAAACAAACCTAGAAATTACGCAGCTAATGCTTGAATTGAAGTAGGATTTAGGATTCTGGAGTTTAGGGTTTTTAGATTCTCCACAAGTTTAA
AGAGATTTGCAGGCAGACATTTAAGAATCTATGTGCTTAACTATGTTGGTGATTTTGGTTTACAGGATGTTAGGTTTCAGTTCATGAACACAGTAAGAAT
TGCAGAGAAGCCTTTGAATTTGACTTACATTCATAGCAGAGCTGATAACAGAACAATTGTCGATGGGAGCCTTGTGATTGATTCTGCAAACAAACTCTCT
GCTAACCACATGGTTGGGACAAACAACTGTAAGATTAAGTATACCTATGCTCATGGAGGGTTAGCTACGTTCGAGCCGTGTTATGACTTGGCGAAAAATA
CATGGGATTTTGCGGTTTCTCGAAGATTTTATAGTGGTGATAATGTGAGGGCAACTTATCAGACGTCTAGTAAGTTGTTGGGTATGGAATGGTCAAGGAA
CAACAAAGCAAGTGGATTCAAGGTAAGAAAGAACATTTTCAGTCGAAAGTTCATATCGTTTACTATATTTTGATGACAATCTTAGTTCTTTAAAGTTAAA
CGGTGATATCAGTGACTTAAACCTGGTAGAAATAGAATTGATTTGATAGATGAAACTGCTACCTACATGGGATGCATAGCTTCTTGACAATAAGGCATCA
TCTTTGGGTTAGGATAGTTCATGTATTCTTTGCTGCATCATAATCAGTAATTTTAGATTGTTCTGTGTATTGGCAATCATATTTAGACATTGGATTTGCT
TTCTTTTGAGCAACAACTATGTCGTGAAGAAGCTTTACCGCTTTACGAACTTTAGAAATTCCATGTGTTTTGGTCGTTGATGGGCTTTATTTTCTTGTTT
CAACAGGTATGTGCGTCTGTGAATCTTGCGGATGAACTGAAAACGCCGAAATTGACCGCAGAAACTACATGGAACCTTGAAATGTAGTCTCTTCTTTACA
CTACTTAGCTAAGTTTCACTTCAATTGTTTGGTGTTGCAACACATTTTACTAGTCGGTTCTTGCGAATCTTCCGAAATTTTGTTGCAACAGTTTCTCATT
ATTATTACTAGCAGTTTCGTCTGTTATCATTGATCATTTCTTAAATTCGCATAAGTTTTGATCGTTC
AT5G42960.1 Coding Sequence (CDS) 639 bases
ATGGCGATGAAGGCTTCTATCAAAGGCAAGTACGATACTGACAAAACCAGTGGAATCGGTTCACTTGCTTTCAACGCCGGCGATATTAAGCTACGCGCCA
CCATGACCGATGCTACTCTCGTCGCCGGTCCTACTTTGACCGGTCTCGCTCTCGCTGTAGAGAAGCCTGGTTCCTTCATCGTCGAGTACAACGTCCCTAA
AAAGGATGTTAGGTTTCAGTTCATGAACACAGTAAGAATTGCAGAGAAGCCTTTGAATTTGACTTACATTCATAGCAGAGCTGATAACAGAACAATTGTC
GATGGGAGCCTTGTGATTGATTCTGCAAACAAACTCTCTGCTAACCACATGGTTGGGACAAACAACTGTAAGATTAAGTATACCTATGCTCATGGAGGGT
TAGCTACGTTCGAGCCGTGTTATGACTTGGCGAAAAATACATGGGATTTTGCGGTTTCTCGAAGATTTTATAGTGGTGATAATGTGAGGGCAACTTATCA
GACGTCTAGTAAGTTGTTGGGTATGGAATGGTCAAGGAACAACAAAGCAAGTGGATTCAAGGTATGTGCGTCTGTGAATCTTGCGGATGAACTGAAAACG
CCGAAATTGACCGCAGAAACTACATGGAACCTTGAAATGTAG
AT5G42960.1 cDNA Sequence 914 bases
GCCGCTCTCACCGAACCTCTGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTACTGTGCGAAAATGGCGAT
GAAGGCTTCTATCAAAGGCAAGTACGATACTGACAAAACCAGTGGAATCGGTTCACTTGCTTTCAACGCCGGCGATATTAAGCTACGCGCCACCATGACC
GATGCTACTCTCGTCGCCGGTCCTACTTTGACCGGTCTCGCTCTCGCTGTAGAGAAGCCTGGTTCCTTCATCGTCGAGTACAACGTCCCTAAAAAGGATG
TTAGGTTTCAGTTCATGAACACAGTAAGAATTGCAGAGAAGCCTTTGAATTTGACTTACATTCATAGCAGAGCTGATAACAGAACAATTGTCGATGGGAG
CCTTGTGATTGATTCTGCAAACAAACTCTCTGCTAACCACATGGTTGGGACAAACAACTGTAAGATTAAGTATACCTATGCTCATGGAGGGTTAGCTACG
TTCGAGCCGTGTTATGACTTGGCGAAAAATACATGGGATTTTGCGGTTTCTCGAAGATTTTATAGTGGTGATAATGTGAGGGCAACTTATCAGACGTCTA
GTAAGTTGTTGGGTATGGAATGGTCAAGGAACAACAAAGCAAGTGGATTCAAGGTATGTGCGTCTGTGAATCTTGCGGATGAACTGAAAACGCCGAAATT
GACCGCAGAAACTACATGGAACCTTGAAATGTAGTCTCTTCTTTACACTACTTAGCTAAGTTTCACTTCAATTGTTTGGTGTTGCAACACATTTTACTAG
TCGGTTCTTGCGAATCTTCCGAAATTTTGTTGCAACAGTTTCTCATTATTATTACTAGCAGTTTCGTCTGTTATCATTGATCATTTCTTAAATTCGCATA
AGTTTTGATCGTTC