ATIDB : The Arabidopsis thaliana Integrated Database

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Names and Synonyms

AT5G19620.1
AT5G19620
T29J13.40
T29J13_40

Gene Ontology Terms

GO:0009941 [AMIGO Graph]
Term : cellular_component, chloroplast envelope
Definition : The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.

MIPS Functional Catalogue Classifications

[99] UNCLASSIFIED PROTEINS


Gene Predictions [*]

Functional Class Prediction Accuracy (%age) Predicted by rule
[GO:0003824] catalytic activity 550/686 80.17 [Seq GOmanual 1 - Rule693]
[GO:0003824] catalytic activity 1591/2089 76.16 [Struc GOmanual 1 - Rule911]
mfc:01 METABOLISM 246/324 75.93 [Hom mipsmanual 1 - Rule181]
mfc:04.05.01.04 transcriptional control 86/95 90.53 [Hom mipsmanual 4 - Rule11]


Gene Insertions

Flanking Sequence : T-DNA_LB.WISC.WiscDsLox393-396K15 [Graphical View|Text]
Location : chromosome 5, base 6627793-6627794
Mapping Score 5 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-429H12-018078 [Graphical View|Text]
Location : chromosome 5, base 6625214-6625215
Mapping Score 2 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-429H12-018098 [Graphical View|Text]
Location : chromosome 5, base 6625203-6625204
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-232G05-014318 [Graphical View|Text]
Location : chromosome 5, base 6624420-6624421
Mapping Score 5 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-430F02-018148 [Graphical View|Text]
Location : chromosome 5, base 6623535-6623536
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-807E07-025560 [Graphical View|Text]
Location : chromosome 5, base 6623481-6623482
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-807E07-025203 [Graphical View|Text]
Location : chromosome 5, base 6623269-6623270
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_107066.50.10.x [Graphical View|Text]
Location : chromosome 5, base 6623229-6623230
Mapping Score 1 [see FAQ]


Design Validation Primers

Automatically design primers for insert validation

InterProScan results


Sequences

AT5G19620.1 Sequences

AT5G19620.1, Protein sequence 732 amino acids
MHCHNDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNR
HTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGLSS
PLLCCASLSLTRPNESTQSVEGKDTVQQQKGHSVSRNAEERVLISEVLVRTKDGEELERK
DLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIRLMFQVEPN
QEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEAITSINGWYMERGLFGIVSDID
TLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPETILRQLTTKKGQVYSMLQGKR
DVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSGGFSAGGGISSGITSGPLSGLI
GSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMVQNSRTPGN
LVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPIIKDFYSSP
LTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVTGRARKGIH
IGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELSFPVRG
PVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGLGVRVDSPLGPLRLEYAFNDQH
AGRFHFGVGLRN*
AT5G19620.1 Sequence 4606 bases
ACTCCGAGTCTCCGAATCAAAAAAAACCCTAGCTCTTATTTTTTGTTCTTAGATTTTATCTCTTAAGCTCTTCTTCTTCCTTGACATTTCCTCAATTTCA
CTCCCGAGTACGATTAACAATGCATTGTCACAACGATGATGTTCGCTTCTCTTCATCTTCTATCAGAATCCATTCTCCATCTCCCAAAGAACAACACTCT
TTACTCACCAATCTCCAATCCTGCTCTAAAACCTTCGTCTCTCACCTCTCAAATACTCGTAACTCACTAAACCAAATGCTCCAGTCGCTAAAGAATCGCC
ACACTCCTCCTCCACGTTCGGTTCGTCGTCCCAATTTACCGACTCAGATGCTCAATTCAGTAACCCAGCTTATGATTGGGAAGTCTTCTCCAATTTCATT
GTCTCTTATCCAATCCACCCAATTCAATTGGTCTGAATCAAGAGATGAGAACGTTGAGACAATCCGTGGACTAAGCTCGCCTCTGCTCTGTTGTGCCTCT
TTGTCTCTAACTAGACCTAACGAGTCGACTCAGTCAGTGGAAGGGAAGGATACAGTACAGCAGCAGAAGGGTCACTCGGTGAGTCGAAATGCGGAGGAAC
GAGTTCTGATTAGTGAGGTTTTAGTAAGAACGAAAGATGGTGAGGAACTTGAGAGGAAGGATTTGGAAATGGAGGCATTGGCTGCTTTGAAAGCTTGTAG
AGCTAATTCAGCGTTGACTATTCGTGAGGTACAGGAGGATGTACATAGGATTATAGAAAGTGGGTACTTTTGCTCTTGTACTCCTGTTGCTGTTGATACA
CGAGACGGGATTCGGTTGATGTTTCAGGTAATATTTTGATTGTTACTCTTTTTGTTGGAGGAGAAAGGTCTCGTTTTTATGTTTCTGGGATGCAAATAAT
TCTCATTTTCTTGCCATAAGGTAGAACCAAACCAAGAATTTCGTGGGTTAGTCTGTGAAAATGCAAATGTTCTTCCTTCCAAGTTCATACATGAAGCTTT
CCGAGATGGGTTTGGTACGTATCCTCCAATTTAGCTTGTTTTTTTTTCTTCTGTACTGTACTAGACTTATCTGTCAATTCATTGATTTACGTTGGGAGTA
AAATGGATTAATGATATTGGAACCTGACAAATATTTCGAGTACTAATGATGAAGCTAAGAATTTTCTAACACATGGTGTAAAATGTGTTAGCCTTGAATG
AAGAAGATAGATTAGAGGTAGGTAGTATTCTCAAAATGTATCCATGCTCCAAAACAGAGCATAATTTGAAGTTGCATTTAGTTTACACATATTAATGTAT
TGAGGCTAGTTAGGTGGATTCCTTCTGTTCGGTGTGTGTTTGATTGGAGAGGGTAATGGTTAGTAAATGTTGGTGTCAAGCTGTGTAGGGAAAGTGATTA
ATATTAAGAGACTGGAAGAAGCTATTACATCCATCAATGGATGGTACATGGAGCGTGGTCTTTTCGGAATTGTAAGTGCTCTTTTTACACCATAATTACT
TTTTCAAAAAAAAAAATCATCCTGGATTCAGTCTTATACTTTGTGGTTAGAATCATCATTCTGTTGTCTGCCATTGTAGGTTTCAGATATTGATACGCTT
TCTGGAGGTATAGTAAGGCTTCAGGTTGCTGAAGCAGAGGTTAACAACATATCCATCCGATTCCTTGATCGTAAGACGTAAGCTGGTGCCAATCCCTCCC
TTATGAATGTAGTTTATATTGGTTTAAATTGTAGGCAATTCTGGATGGCACTGGTAGCTTCCTTTTATTTCAACTATTAGATTACGATTTCATTGATAAT
GGTGCCTTCTATATTTAGTGGGGAACCAACTAAAGGGAAGACTAGCCCTGAGACAATACTACGGCAACTTACAACAAAGAAGGGACAGGTATTTTTTGGG
CATTTCTCAGCTTAGATGTAAAGATAAGTCGCTGACTAAAACATCATAAACTATCTGAGCTGTATTTTTATGCTAAATAACACTTCTGAGTGCATCATCT
GTGTATGAAATCCTTTGGAGATCTTATTTTTAATTAAGGTTAATCACTCTTTATGGTATCATGTATGTTTCTTCGTAAAATTTGGCCTTAAAGTCTTTAT
GCATGAGCGTCTAAGTAGGGCCTCTACATACACATCTTGTCTAATCTGGCTTTTGGTCAATTTAGGTCTACAGCATGCTTCAAGGGAAGAGGGATGTAGA
CACTGTGCTAGCCATGGGAATCATGGAAGATGTTAGTATTATTCCTCAACCTGCAGGAGGTGTGTAAATATATTTCTTTCTTTTCAGCTAATACTTTTAA
TTTTCATCTTGTGCTTAAGGTGCAGTAGTATGAGTGAAGAAAGTATTTTCCTTGCTTATCCTTAGGCACAGTAACAAAAGGTTTTGACAGTGTCTGATTC
TGAAACTTTCTTCTTTTCCTTGTTTTTTATTCCTGTTAGATAGTGGGAAGGTTGATTTGATCATGAACTGTGTCGAGCGTCCCAGTGGAGGCTTCTCTGC
TGGTGGTGGGATATCTAGTGGGTAAGTTTTAGTTTGTTTGCTACTTACAGCGATTCAATTTTTTTCTTTTGTAGCTTGATGACAACTTTTGTCCAATTCT
TTTGTAGGATCACAAGTGGCCCCCTATCAGGATTAATTGGAAGGTAAAAGTAATGTATATTTTATTTGTAATGATTTTTTTTTTATTTCTGGCCTAGGCT
GTGTGTATTACATTACTGATGTAGTTGAAGTAATCATTTTATGCAGCTTCGCTTATTCCCACCGCAATCTGTTTGGAAGAAACCAGAAGCTTAATGTTTC
CTTAGAGAGGGGTCAAATTGACTCTATATTTCGTATAAACTACACTGATCCATGGATTGAAGGAGATGACAAGAGGACGTCCAGATCTATTATGGTTCAG
GTAACACCTTTACTGGTTATCTCAATGAGATTGCTGAGATGACTAATAAACTAATGAACTTCATCTTGAGTTAGAATTCAAGAACACCGGGGAATCTTGT
TCACGGCAATCAACCAGACAATAGTAGTCTCACAATTGGTCGGGTTACAGCAGGTGTTGAATACAGTCGTCCATTCAGGCCAAAGTGGAATGGTACTGCT
GGACTTATATTTCAGGTCTCTACTGTTCCCAATATTTTCTAAGTTTCTGTACCAATCCAGAGTAATATTGGTGTTAAAGCAATTAAAATATATGTTCTTG
TCGTTTCTGACTAGATCCAAACTGGTAAATTTTTTACTTTTTGACCAATATATACGTTACCCTTAATTTCGTTTTGAATTTCATGTTTCAGCATGCTGGT
GCTCGTGATGAACAAGGAAACCCTATCATTAAGGACTTCTACAGTAGCCCTCTAACTGCAAGGTATATATATGTCCCAATTCCCAAAGAATGATTTGTCT
TTGGTTCTGCTCACTGTTTTCACCAATGCTGTATTTGGCCATATGAATTTGATAGATGCCATTATTAATGTTTTCTCATGCAGTGGTAAGCCCCATGATG
AGACCATGCTAGCAAAACTTGAAAGCATTTATACTGGCTCAGGTGACCAAGGATCAACGATGGTCAGTCTGATACCTCTGTTGGTACATCTTCCCCTTCT
TTTTTCAGTGCCTAATTCTATCTGTATTTTTATACCAGTTTGCGTTTAACATGGAACAAGGGCTTCCTGTTTTGCCCGAATGGTTATGTTTCAATCGAGT
GACTGGACGTGCCAGGAAAGGCATACACATTGGACCAGCTCGTTTCCTTTTTAGGTATGCTAACTTCCTTTGAGGCATATAATTTTCTTGAGGTCTCTAT
TTACCTTTTGGGATTCGAATCATCATTTCTAAAGTTTTATATAGTGTATCTTACCTTGTTCATGTTTATAGTCTGTCTGGTGGACATGTGGTGGGAAAAT
TTTCACCTCATGAAGCATTCGTCATCGGTGGAACAAACAGCGTAAGAGGTTACGAAGAGGGCGCTGTAGGATCTGGTCGGTCATATGTAGTTGGTTCAGG
GGAGCTGTCTTTCCCAGTGGTGGGTTTTTCTTTGAACATTCCTAAGATCTCATTTCACAATGGTGTAAAAATCATGACTCTCATTCTTACCCTATTGTGC
AGAGAGGACCGGTCGAAGGCGTCATTTTTACAGATTATGGCACTGATATGGGATCAGGATCCACCGTCCCAGGTACAGACTAGGCTTTCGTTTTTTTTTT
CTCCTTCTGAGCCTTTCCATATATGCTTGTAATAGCTTTAGAATCTCAGGGAACCTTCATCTTTGTTATTTTCTGCCCTTTAGGTGATCCTGCGGGGGCA
AGACTGAAGCCCGGAAGCGGTTATGGATATGGTTTAGGGGTGCGTGTTGATTCCCCGTTGGGGCCGCTACGCCTTGAATATGCCTTCAACGATCAACATG
CGGGAAGGTTTCACTTTGGGGTTGGTCTGCGGAACTAAATTTTCCTGTTTCTTTTTTAGATTCGATAAGTGTTTTGTCGGCCTTTGTCGCACATTCATCT
AGATGATGCTTGTCTATTTTGATAATTTATATCATCTTATGTAACTCACTGTTTTGTGAGTGGTTTGTGCATGGAGAGAGATGTCGCGTATGAATGCTTT
TCATGT
AT5G19620.1 Coding Sequence (CDS) 2196 bases
ATGCATTGTCACAACGATGATGTTCGCTTCTCTTCATCTTCTATCAGAATCCATTCTCCATCTCCCAAAGAACAACACTCTTTACTCACCAATCTCCAAT
CCTGCTCTAAAACCTTCGTCTCTCACCTCTCAAATACTCGTAACTCACTAAACCAAATGCTCCAGTCGCTAAAGAATCGCCACACTCCTCCTCCACGTTC
GGTTCGTCGTCCCAATTTACCGACTCAGATGCTCAATTCAGTAACCCAGCTTATGATTGGGAAGTCTTCTCCAATTTCATTGTCTCTTATCCAATCCACC
CAATTCAATTGGTCTGAATCAAGAGATGAGAACGTTGAGACAATCCGTGGACTAAGCTCGCCTCTGCTCTGTTGTGCCTCTTTGTCTCTAACTAGACCTA
ACGAGTCGACTCAGTCAGTGGAAGGGAAGGATACAGTACAGCAGCAGAAGGGTCACTCGGTGAGTCGAAATGCGGAGGAACGAGTTCTGATTAGTGAGGT
TTTAGTAAGAACGAAAGATGGTGAGGAACTTGAGAGGAAGGATTTGGAAATGGAGGCATTGGCTGCTTTGAAAGCTTGTAGAGCTAATTCAGCGTTGACT
ATTCGTGAGGTACAGGAGGATGTACATAGGATTATAGAAAGTGGGTACTTTTGCTCTTGTACTCCTGTTGCTGTTGATACACGAGACGGGATTCGGTTGA
TGTTTCAGGTAGAACCAAACCAAGAATTTCGTGGGTTAGTCTGTGAAAATGCAAATGTTCTTCCTTCCAAGTTCATACATGAAGCTTTCCGAGATGGGTT
TGGGAAAGTGATTAATATTAAGAGACTGGAAGAAGCTATTACATCCATCAATGGATGGTACATGGAGCGTGGTCTTTTCGGAATTGTTTCAGATATTGAT
ACGCTTTCTGGAGGTATAGTAAGGCTTCAGGTTGCTGAAGCAGAGGTTAACAACATATCCATCCGATTCCTTGATCGTAAGACTGGGGAACCAACTAAAG
GGAAGACTAGCCCTGAGACAATACTACGGCAACTTACAACAAAGAAGGGACAGGTCTACAGCATGCTTCAAGGGAAGAGGGATGTAGACACTGTGCTAGC
CATGGGAATCATGGAAGATGTTAGTATTATTCCTCAACCTGCAGGAGATAGTGGGAAGGTTGATTTGATCATGAACTGTGTCGAGCGTCCCAGTGGAGGC
TTCTCTGCTGGTGGTGGGATATCTAGTGGGATCACAAGTGGCCCCCTATCAGGATTAATTGGAAGCTTCGCTTATTCCCACCGCAATCTGTTTGGAAGAA
ACCAGAAGCTTAATGTTTCCTTAGAGAGGGGTCAAATTGACTCTATATTTCGTATAAACTACACTGATCCATGGATTGAAGGAGATGACAAGAGGACGTC
CAGATCTATTATGGTTCAGAATTCAAGAACACCGGGGAATCTTGTTCACGGCAATCAACCAGACAATAGTAGTCTCACAATTGGTCGGGTTACAGCAGGT
GTTGAATACAGTCGTCCATTCAGGCCAAAGTGGAATGGTACTGCTGGACTTATATTTCAGCATGCTGGTGCTCGTGATGAACAAGGAAACCCTATCATTA
AGGACTTCTACAGTAGCCCTCTAACTGCAAGTGGTAAGCCCCATGATGAGACCATGCTAGCAAAACTTGAAAGCATTTATACTGGCTCAGGTGACCAAGG
ATCAACGATGTTTGCGTTTAACATGGAACAAGGGCTTCCTGTTTTGCCCGAATGGTTATGTTTCAATCGAGTGACTGGACGTGCCAGGAAAGGCATACAC
ATTGGACCAGCTCGTTTCCTTTTTAGTCTGTCTGGTGGACATGTGGTGGGAAAATTTTCACCTCATGAAGCATTCGTCATCGGTGGAACAAACAGCGTAA
GAGGTTACGAAGAGGGCGCTGTAGGATCTGGTCGGTCATATGTAGTTGGTTCAGGGGAGCTGTCTTTCCCAGTGAGAGGACCGGTCGAAGGCGTCATTTT
TACAGATTATGGCACTGATATGGGATCAGGATCCACCGTCCCAGGTGATCCTGCGGGGGCAAGACTGAAGCCCGGAAGCGGTTATGGATATGGTTTAGGG
GTGCGTGTTGATTCCCCGTTGGGGCCGCTACGCCTTGAATATGCCTTCAACGATCAACATGCGGGAAGGTTTCACTTTGGGGTTGGTCTGCGGAACTAA
AT5G19620.1 cDNA Sequence 2486 bases
ACTCCGAGTCTCCGAATCAAAAAAAACCCTAGCTCTTATTTTTTGTTCTTAGATTTTATCTCTTAAGCTCTTCTTCTTCCTTGACATTTCCTCAATTTCA
CTCCCGAGTACGATTAACAATGCATTGTCACAACGATGATGTTCGCTTCTCTTCATCTTCTATCAGAATCCATTCTCCATCTCCCAAAGAACAACACTCT
TTACTCACCAATCTCCAATCCTGCTCTAAAACCTTCGTCTCTCACCTCTCAAATACTCGTAACTCACTAAACCAAATGCTCCAGTCGCTAAAGAATCGCC
ACACTCCTCCTCCACGTTCGGTTCGTCGTCCCAATTTACCGACTCAGATGCTCAATTCAGTAACCCAGCTTATGATTGGGAAGTCTTCTCCAATTTCATT
GTCTCTTATCCAATCCACCCAATTCAATTGGTCTGAATCAAGAGATGAGAACGTTGAGACAATCCGTGGACTAAGCTCGCCTCTGCTCTGTTGTGCCTCT
TTGTCTCTAACTAGACCTAACGAGTCGACTCAGTCAGTGGAAGGGAAGGATACAGTACAGCAGCAGAAGGGTCACTCGGTGAGTCGAAATGCGGAGGAAC
GAGTTCTGATTAGTGAGGTTTTAGTAAGAACGAAAGATGGTGAGGAACTTGAGAGGAAGGATTTGGAAATGGAGGCATTGGCTGCTTTGAAAGCTTGTAG
AGCTAATTCAGCGTTGACTATTCGTGAGGTACAGGAGGATGTACATAGGATTATAGAAAGTGGGTACTTTTGCTCTTGTACTCCTGTTGCTGTTGATACA
CGAGACGGGATTCGGTTGATGTTTCAGGTAGAACCAAACCAAGAATTTCGTGGGTTAGTCTGTGAAAATGCAAATGTTCTTCCTTCCAAGTTCATACATG
AAGCTTTCCGAGATGGGTTTGGGAAAGTGATTAATATTAAGAGACTGGAAGAAGCTATTACATCCATCAATGGATGGTACATGGAGCGTGGTCTTTTCGG
AATTGTTTCAGATATTGATACGCTTTCTGGAGGTATAGTAAGGCTTCAGGTTGCTGAAGCAGAGGTTAACAACATATCCATCCGATTCCTTGATCGTAAG
ACTGGGGAACCAACTAAAGGGAAGACTAGCCCTGAGACAATACTACGGCAACTTACAACAAAGAAGGGACAGGTCTACAGCATGCTTCAAGGGAAGAGGG
ATGTAGACACTGTGCTAGCCATGGGAATCATGGAAGATGTTAGTATTATTCCTCAACCTGCAGGAGATAGTGGGAAGGTTGATTTGATCATGAACTGTGT
CGAGCGTCCCAGTGGAGGCTTCTCTGCTGGTGGTGGGATATCTAGTGGGATCACAAGTGGCCCCCTATCAGGATTAATTGGAAGCTTCGCTTATTCCCAC
CGCAATCTGTTTGGAAGAAACCAGAAGCTTAATGTTTCCTTAGAGAGGGGTCAAATTGACTCTATATTTCGTATAAACTACACTGATCCATGGATTGAAG
GAGATGACAAGAGGACGTCCAGATCTATTATGGTTCAGAATTCAAGAACACCGGGGAATCTTGTTCACGGCAATCAACCAGACAATAGTAGTCTCACAAT
TGGTCGGGTTACAGCAGGTGTTGAATACAGTCGTCCATTCAGGCCAAAGTGGAATGGTACTGCTGGACTTATATTTCAGCATGCTGGTGCTCGTGATGAA
CAAGGAAACCCTATCATTAAGGACTTCTACAGTAGCCCTCTAACTGCAAGTGGTAAGCCCCATGATGAGACCATGCTAGCAAAACTTGAAAGCATTTATA
CTGGCTCAGGTGACCAAGGATCAACGATGTTTGCGTTTAACATGGAACAAGGGCTTCCTGTTTTGCCCGAATGGTTATGTTTCAATCGAGTGACTGGACG
TGCCAGGAAAGGCATACACATTGGACCAGCTCGTTTCCTTTTTAGTCTGTCTGGTGGACATGTGGTGGGAAAATTTTCACCTCATGAAGCATTCGTCATC
GGTGGAACAAACAGCGTAAGAGGTTACGAAGAGGGCGCTGTAGGATCTGGTCGGTCATATGTAGTTGGTTCAGGGGAGCTGTCTTTCCCAGTGAGAGGAC
CGGTCGAAGGCGTCATTTTTACAGATTATGGCACTGATATGGGATCAGGATCCACCGTCCCAGGTGATCCTGCGGGGGCAAGACTGAAGCCCGGAAGCGG
TTATGGATATGGTTTAGGGGTGCGTGTTGATTCCCCGTTGGGGCCGCTACGCCTTGAATATGCCTTCAACGATCAACATGCGGGAAGGTTTCACTTTGGG
GTTGGTCTGCGGAACTAAATTTTCCTGTTTCTTTTTTAGATTCGATAAGTGTTTTGTCGGCCTTTGTCGCACATTCATCTAGATGATGCTTGTCTATTTT
GATAATTTATATCATCTTATGTAACTCACTGTTTTGTGAGTGGTTTGTGCATGGAGAGAGATGTCGCGTATGAATGCTTTTCATGT