ATIDB : The Arabidopsis thaliana Integrated Database

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Names and Synonyms

ATOEP16-2
AT4G16160.2
AT4G16160
ATOEP16-S
DL4120W
FCAALL.207
AT4G16160

Gene Ontology Terms

GO:0005744 [AMIGO Graph]
Term : cellular_component, mitochondrial inner membrane presequence translocase complex
Definition : The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor.

GO:0015031 [AMIGO Graph]
Term : biological_process, protein transport
Definition : The directed movement of proteins into, out of, within or between cells.

GO:0009527 [AMIGO Graph]
Term : cellular_component, plastid outer membrane
Definition : The outer, i.e. cytoplasm-facing, lipid bilayer of the plastid envelope.

MIPS Functional Catalogue Classifications

[20] CELLULAR TRANSPORT, TRANSPORT FACILITATION AND TRANSPORT ROUTES
[20.01] transported compounds (substrates)
[20.01.07] amino acid/amino acid derivatives transport
[20.03] transport facilities
[20.09] transport routes
[20.09.02] chloroplast transport


Gene Predictions [*]

Functional Class Prediction Accuracy (%age) Predicted by rule
[GO:0003824] catalytic activity 1591/2089 76.16 [Struc GOmanual 1 - Rule911]
[GO:0005488] binding 453/516 87.79 [Hom GOmanual 1 - Rule256]
[GO:0000166] nucleotide binding 7/9 77.78 [Seq GOmanual 2 - Rule1424]
[GO:0005386] carrier activity 32/38 84.21 [Hom GOmanual 2 - Rule571]
[GO:0004840] ubiquitin conjugating enzyme activity 16/19 84.21 [Hom GOmanual 3 - Rule388]
[GO:0015399] primary active transporter activity 27/32 84.38 [Hom GOmanual 3 - Rule515]
[GO:0005279] amino acid-polyamine transporter activity 17/22 77.27 [Hom GOmanual 4 - Rule545]
[GO:0015171] amino acid transporter activity 17/22 77.27 [Hom GOmanual 4 - Rule546]
mfc:04.05.01.04 transcriptional control 86/95 90.53 [Hom mipsmanual 4 - Rule11]


Gene Insertions

Flanking Sequence : T-DNA_LB.SALK_076407.51.85.x [Graphical View|Text]
Location : chromosome 4, base 9158790-9158791
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_076409.48.80.x [Graphical View|Text]
Location : chromosome 4, base 9158790-9158791
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_014191 [Graphical View|Text]
Location : chromosome 4, base 9158788-9158789
Mapping Score 5 [see FAQ]


Design Validation Primers

Automatically design primers for insert validation

InterProScan results


Sequences

AT4G16160.1 Sequences

AT4G16160.1, Protein sequence 176 amino acids
MEKSGGRIVMDEIRSFEKAHLFDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGF
DSNNVGPPSEITGNKKHRFPNLRGESSKSLDALVKNTGKESLQWGLAAGLYSGITYGMTE
VRGGAHDWRNSAVAGALTGAAMAMTTSERTSHEQVVQSALTGAAISTAANLLSSVF*
AT4G16160.1 Sequence 1407 bases
GAAGAAAGAAAGAAAAAAATGGAGAAGAGTGGAGGAAGAATTGTAATGGATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATCTTGGTCATCCTC
TTCTTAACCGTATCGCAGATTCCTTCGTTAAAGCCGCCGGAGTAAGTTTTCATCCATATCTCTTCGTTTCCCTGTCGTATATGCATGTAACATATATGTA
GTAACATAGCTTAATATGGATTAACTATGAAGGTGGGAGCTTTACAAGCCGTGTCAAGGGAAGCTTACTTTACCGTGGTTGACGGTAAGAAACTCCGGCG
GGTTTCTTCTTACTTATGATTTATATGTATAAGAAATGAGTATGTAATGTAAGAGTGAAAATGAATAAATAGAGAACGTACTTTAGTTTGATTATACATT
TTAGGGGCAGGTTTTGACTCGAACAACGTGGGTCCACCGTCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGTCCGTAACATAATT
GTATCATATTTGGTTGATGATCTTATGTAATCAGCATTATGTTTATCTTAATGATGTTTTATCGTTGTTTTCTTAATCAGGGGAAAGCAGCAAATCTCTT
GATGCATTGGTGAGTTTATTACAATCGCTAATTATTAGCCTTTTATTATTCGTCAAATATTCGTGTGCTAGTGTGCTAGTGTGTTCATATCTAAGTGTTG
CAAAATAATACATAAAGAATGGTCGTAACTCATAAGGTTTCTTGTTAGTTAACTGAAAATGTTTAAATTTGTTGGCCTATAGGTGAAGAACACAGGAAAA
GAATCTCTCCAATGGGGTGAGTTTATATATGAATTTGATTAAGTTAACGCTTCACGATTAACGTTGGAAAGAGATTTAATGATTTGGGAATGGTAGGGCT
AGCGGCAGGGTTATACTCAGGTATCACTTACGGTATGACAGAGGTTCGTGGAGGAGCTCATGATTGGGTTAGTCTAATTAATTTGACTTGTGTCATTTTG
TTTTCATCAACGAACAAATGATGAACATGATCTTTAATTAGTATGTAATTTGATATGTGTCACAGCGGAACAGCGCGGTAGCTGGAGCATTGACAGGAGC
GGCAATGGCTATGACGACGTCTGAGAGGACAAGCCATGAGCAAGTGGTTCAGTCTGCTCTCACTGGAGCAGCTATTTCCACCGCTGCTAATCTCCTTTCT
AGCGTTTTCTAGATGATTTGTATTAGAAGCTTTAATGCATAAGGGTTGTTTCATGTATCAGTTATGTTTCTTTTTGTGAAAACGAATTCGCTAAAGGTCT
ACTAAGATCTTTTCCTGAAACTCTCGAAGCTGGAGAGAGATCGTTTTGTTATCTGTTTGGAAAATATTTGCACTATATATATCTTGAGTAGTACCTATTA
CGTAACC
AT4G16160.1 Coding Sequence (CDS) 528 bases
ATGGAGAAGAGTGGAGGAAGAATTGTAATGGATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATCTTGGTCATCCTCTTCTTAACCGTATCGCAG
ATTCCTTCGTTAAAGCCGCCGGAGTGGGAGCTTTACAAGCCGTGTCAAGGGAAGCTTACTTTACCGTGGTTGACGGTTTTGACTCGAACAACGTGGGTCC
ACCGTCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGGGAAAGCAGCAAATCTCTTGATGCATTGGTGAAGAACACAGGAAAAGAA
TCTCTCCAATGGGGGCTAGCGGCAGGGTTATACTCAGGTATCACTTACGGTATGACAGAGGTTCGTGGAGGAGCTCATGATTGGCGGAACAGCGCGGTAG
CTGGAGCATTGACAGGAGCGGCAATGGCTATGACGACGTCTGAGAGGACAAGCCATGAGCAAGTGGTTCAGTCTGCTCTCACTGGAGCAGCTATTTCCAC
CGCTGCTAATCTCCTTTCTAGCGTTTTCTAG
AT4G16160.1 cDNA Sequence 744 bases
GAAGAAAGAAAGAAAAAAATGGAGAAGAGTGGAGGAAGAATTGTAATGGATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATCTTGGTCATCCTC
TTCTTAACCGTATCGCAGATTCCTTCGTTAAAGCCGCCGGAGTGGGAGCTTTACAAGCCGTGTCAAGGGAAGCTTACTTTACCGTGGTTGACGGTTTTGA
CTCGAACAACGTGGGTCCACCGTCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGGGAAAGCAGCAAATCTCTTGATGCATTGGTG
AAGAACACAGGAAAAGAATCTCTCCAATGGGGGCTAGCGGCAGGGTTATACTCAGGTATCACTTACGGTATGACAGAGGTTCGTGGAGGAGCTCATGATT
GGCGGAACAGCGCGGTAGCTGGAGCATTGACAGGAGCGGCAATGGCTATGACGACGTCTGAGAGGACAAGCCATGAGCAAGTGGTTCAGTCTGCTCTCAC
TGGAGCAGCTATTTCCACCGCTGCTAATCTCCTTTCTAGCGTTTTCTAGATGATTTGTATTAGAAGCTTTAATGCATAAGGGTTGTTTCATGTATCAGTT
ATGTTTCTTTTTGTGAAAACGAATTCGCTAAAGGTCTACTAAGATCTTTTCCTGAAACTCTCGAAGCTGGAGAGAGATCGTTTTGTTATCTGTTTGGAAA
ATATTTGCACTATATATATCTTGAGTAGTACCTATTACGTAACC
AT4G16160.2 Sequences

AT4G16160.2, Protein sequence 178 amino acids
MEKSGGRIVMDEIRSFEKAHLFDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGA
GFDSNNVGPPSEITGNKKHRFPNLRGESSKSLDALVKNTGKESLQWGLAAGLYSGITYGM
TEVRGGAHDWRNSAVAGALTGAAMAMTTSERTSHEQVVQSALTGAAISTAANLLSSVF*
AT4G16160.2 Sequence 1419 bases
GAAGCAACAAGTGAAGAAAGAAAGAAAAAAATGGAGAAGAGTGGAGGAAGAATTGTAATGGATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATC
TTGGTCATCCTCTTCTTAACCGTATCGCAGATTCCTTCGTTAAAGCCGCCGGAGTAAGTTTTCATCCATATCTCTTCGTTTCCCTGTCGTATATGCATGT
AACATATATGTAGTAACATAGCTTAATATGGATTAACTATGAAGGTGGGAGCTTTACAAGCCGTGTCAAGGGAAGCTTACTTTACCGTGGTTGACGGTAA
GAAACTCCGGCGGGTTTCTTCTTACTTATGATTTATATGTATAAGAAATGAGTATGTAATGTAAGAGTGAAAATGAATAAATAGAGAACGTACTTTAGTT
TGATTATACATTTTAGGGGCAGGTTTTGACTCGAACAACGTGGGTCCACCGTCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGTC
CGTAACATAATTGTATCATATTTGGTTGATGATCTTATGTAATCAGCATTATGTTTATCTTAATGATGTTTTATCGTTGTTTTCTTAATCAGGGGAAAGC
AGCAAATCTCTTGATGCATTGGTGAGTTTATTACAATCGCTAATTATTAGCCTTTTATTATTCGTCAAATATTCGTGTGCTAGTGTGCTAGTGTGTTCAT
ATCTAAGTGTTGCAAAATAATACATAAAGAATGGTCGTAACTCATAAGGTTTCTTGTTAGTTAACTGAAAATGTTTAAATTTGTTGGCCTATAGGTGAAG
AACACAGGAAAAGAATCTCTCCAATGGGGTGAGTTTATATATGAATTTGATTAAGTTAACGCTTCACGATTAACGTTGGAAAGAGATTTAATGATTTGGG
AATGGTAGGGCTAGCGGCAGGGTTATACTCAGGTATCACTTACGGTATGACAGAGGTTCGTGGAGGAGCTCATGATTGGGTTAGTCTAATTAATTTGACT
TGTGTCATTTTGTTTTCATCAACGAACAAATGATGAACATGATCTTTAATTAGTATGTAATTTGATATGTGTCACAGCGGAACAGCGCGGTAGCTGGAGC
ATTGACAGGAGCGGCAATGGCTATGACGACGTCTGAGAGGACAAGCCATGAGCAAGTGGTTCAGTCTGCTCTCACTGGAGCAGCTATTTCCACCGCTGCT
AATCTCCTTTCTAGCGTTTTCTAGATGATTTGTATTAGAAGCTTTAATGCATAAGGGTTGTTTCATGTATCAGTTATGTTTCTTTTTGTGAAAACGAATT
CGCTAAAGGTCTACTAAGATCTTTTCCTGAAACTCTCGAAGCTGGAGAGAGATCGTTTTGTTATCTGTTTGGAAAATATTTGCACTATATATATCTTGAG
TAGTACCTATTACGTAACC
AT4G16160.2 Coding Sequence (CDS) 534 bases
ATGGAGAAGAGTGGAGGAAGAATTGTAATGGATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATCTTGGTCATCCTCTTCTTAACCGTATCGCAG
ATTCCTTCGTTAAAGCCGCCGGAGTGGGAGCTTTACAAGCCGTGTCAAGGGAAGCTTACTTTACCGTGGTTGACGGGGCAGGTTTTGACTCGAACAACGT
GGGTCCACCGTCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGGGAAAGCAGCAAATCTCTTGATGCATTGGTGAAGAACACAGGA
AAAGAATCTCTCCAATGGGGGCTAGCGGCAGGGTTATACTCAGGTATCACTTACGGTATGACAGAGGTTCGTGGAGGAGCTCATGATTGGCGGAACAGCG
CGGTAGCTGGAGCATTGACAGGAGCGGCAATGGCTATGACGACGTCTGAGAGGACAAGCCATGAGCAAGTGGTTCAGTCTGCTCTCACTGGAGCAGCTAT
TTCCACCGCTGCTAATCTCCTTTCTAGCGTTTTCTAG
AT4G16160.2 cDNA Sequence 762 bases
GAAGCAACAAGTGAAGAAAGAAAGAAAAAAATGGAGAAGAGTGGAGGAAGAATTGTAATGGATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATC
TTGGTCATCCTCTTCTTAACCGTATCGCAGATTCCTTCGTTAAAGCCGCCGGAGTGGGAGCTTTACAAGCCGTGTCAAGGGAAGCTTACTTTACCGTGGT
TGACGGGGCAGGTTTTGACTCGAACAACGTGGGTCCACCGTCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGGGAAAGCAGCAAA
TCTCTTGATGCATTGGTGAAGAACACAGGAAAAGAATCTCTCCAATGGGGGCTAGCGGCAGGGTTATACTCAGGTATCACTTACGGTATGACAGAGGTTC
GTGGAGGAGCTCATGATTGGCGGAACAGCGCGGTAGCTGGAGCATTGACAGGAGCGGCAATGGCTATGACGACGTCTGAGAGGACAAGCCATGAGCAAGT
GGTTCAGTCTGCTCTCACTGGAGCAGCTATTTCCACCGCTGCTAATCTCCTTTCTAGCGTTTTCTAGATGATTTGTATTAGAAGCTTTAATGCATAAGGG
TTGTTTCATGTATCAGTTATGTTTCTTTTTGTGAAAACGAATTCGCTAAAGGTCTACTAAGATCTTTTCCTGAAACTCTCGAAGCTGGAGAGAGATCGTT
TTGTTATCTGTTTGGAAAATATTTGCACTATATATATCTTGAGTAGTACCTATTACGTAACC