ATIDB : The Arabidopsis thaliana Integrated Database

Home Genome Browser BLAST Gene Traps Sub-Seq Contact

Names and Synonyms

AT4G15440.1
HPL1
AT4G15440
DL3766W
FCAALL.125
AT4G15440
CYP74B2
HYDROPEROXIDE LYASE 1

Gene Ontology Terms

GO:0008372 [AMIGO Graph]
Term : cellular_component, cellular component unknown
Definition : Used for the annotation of gene products whose localization is not known or cannot be inferred.

GO:0006631 [AMIGO Graph]
Term : biological_process, fatty acid metabolism
Definition : The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.

MIPS Functional Catalogue Classifications

[01] METABOLISM
[01.06] lipid, fatty acid and isoprenoid metabolism


Gene Predictions [*]

Functional Class Prediction Accuracy (%age) Predicted by rule
[GO:0003824] catalytic activity 821/1036 79.25 [Seq GOmanual 1 - Rule470]
[GO:0005488] binding 83/87 95.4 [Interpro GOall 1 - Rule808]
[GO:0005488] binding 83/87 95.4 [Interpro GOmanual 1 - Rule479]


Gene Insertions

Flanking Sequence : T-DNA_LB.SALK_091988.48.00.x [Graphical View|Text]
Location : chromosome 4, base 8838265-8838266
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_094392 [Graphical View|Text]
Location : chromosome 4, base 8838062-8838063
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_114071.52.40.x [Graphical View|Text]
Location : chromosome 4, base 8838043-8838044
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_149325.34.10.n [Graphical View|Text]
Location : chromosome 4, base 8837825-8837826
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_008351.53.20.x [Graphical View|Text]
Location : chromosome 4, base 8837734-8837735
Mapping Score 5 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-597D06-025558 [Graphical View|Text]
Location : chromosome 4, base 8837209-8837210
Mapping Score 6 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_147214.55.25.x [Graphical View|Text]
Location : chromosome 4, base 8837119-8837120
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_147213.52.35.x [Graphical View|Text]
Location : chromosome 4, base 8837111-8837112
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_042404 [Graphical View|Text]
Location : chromosome 4, base 8836300-8836301
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_042412 [Graphical View|Text]
Location : chromosome 4, base 8836300-8836301
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_085831.45.90.x [Graphical View|Text]
Location : chromosome 4, base 8836260-8836261
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_047718.46.45.x [Graphical View|Text]
Location : chromosome 4, base 8835814-8835815
Mapping Score 2 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-380A12-017222 [Graphical View|Text]
Location : chromosome 4, base 8835678-8835679
Mapping Score 5 [see FAQ]


Design Validation Primers

Automatically design primers for insert validation

InterProScan results

IPR002403 E-class P450, group IV [ FPrintScan, EP450IV, PR00465, score, 2.5e-09] IPR002403 E-class P450, group IV [ FPrintScan, EP450IV, PR00465, score, 2.5e-09] IPR002403 E-class P450, group IV [ FPrintScan, EP450IV, PR00465, score, 2.5e-09] IPR001128 Cytochrome P450 [ HMMPanther, CYTOCHROME P450, PTHR19383, score, 1.8e-18] IPR001128 Cytochrome P450 [ superfamily, Cytochrome P450, SSF48264, score, 5.1e-36]
Sequences

AT4G15440.1 Sequences

AT4G15440.1, Protein sequence 384 amino acids
MDLVDKRDVLIGDFRPSLGFYGGVRVGVYLDTTEPKHAKIKGFAMETLKRSSKVWLQELR
SNLNIFWGTIESEISKNGAASYIFPLQRCIFSFLCASLAGVDASVSPDIAENGWKTINTW
LALQVIPTAKLGVVPQPLEEILLHTWPYPSLLIAGNYKKLYNFIDENAGDCLRLGQEEFG
LTRDEAIQNLLFVLGFNAYGGFSVFLPSLIGRITGDNSGLQERIRTEVRRVCGSGSDLNF
KTVNEMELVKSVVYETLRFSPPVPLQFARARKDFQISSHDAVFEVKKGELLCGYQPLVMR
DANVFDEPEEFKPDRYVGETGSELLNYLYWSNGPQTGTPSASNKQCAAKDIVTLTASLLV
ADLFLRYDTITGDSGSIKAVVKAK*
AT4G15440.1 Sequence 3182 bases
ATAGAAATAGAAGGCGAAGAGATAATTTCCAAAAACAAGAAAAACCTCTAAGCTCAAAAGATGTTGTTGAGAACGATGGCGGCGACTTCCCCGCGGCCAC
CACCGTCAACATCCCTAACATCTCAGCAGCCACCATCACCCCCCTCACAGCTTCCCCTCCGTACAATGCCGGGATCGTACGGCTGGCCGTTGGTTGGACC
ATTATCGGACCGTTTAGATTCCAAGGACCCGATAAGTTTTTCCGGACAAGAGCTGAGAAGTATAAGAGCACTGTGTTCCGTACAAATATTCCTCCGACGT
TTCCTTTCTTCGGCAACGTTAACCCTAACATCGTCGCCGTTCTTGACGTCAAGTCTTTTAGCCATCTTTTTGACATGGATCTAGTTGATAAAAGAGATGT
TCTCATCGGAGACTTCCGGCCTAGCCTTGGGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTCGACACTACTGAGCCAAAGCACGCCAAGGTTCGTACA
TACGTTGCTTTGCTACTATTACGTACGAGTATATAATTAATTAATACGGTAACAACAAAGTAACCAAATCTTTGGTTTGACTGGTATCTAGAATAAATTT
TAATCAAAGGTCCGACACTTTCTAGACCAAAAAAACAATACGTATATAGATTGTACCATAAATAATTAAACCATAGTAAGAGATGTACTTTAAGAGAATT
TTTTTGAAGTTTTCAAAATTAATCGAACCAAACCTAACTAGTTAGTTATTATGAGTGTGGCTTTTTAGTGACTGGATTTGATGTCAAGTGATTTTACTAT
AAATTGATCTTAAATTGTTTTGGAAAATCTTAAGCGGACTAATGGGATTTTATCTCAGATTTGGAGAATTCATTTTTGAGGCAATTAAGTTTTTCTGATA
TTAGTATATTGCTGAAAAAATGAAAAACAATAATTATAAAAAAGGAAACTATAAGTTAAAAAAAAAAATTGTTGGCAGTCTTTAATTGTACCAATCCTGT
GAGACTTTATTATTACAGACTAGATGATCACCCGCGCTACGCTGCGGTTTTTTCGGATTTTTTTGTATTATTTAATTTAAATTTAATTTTTATTTATCTA
ATCATTCACTCATGCAATAAGTAATTACTTTAATATTAAAAATATTTTTTTCTAACAACATTCTCAACAATGCATCATACATATAATTCATAAACAACAT
TTGTCTTAAACCAATTTAAGAGAGGGTAGGGTTGGATTCTAGAAACCTGAGAATTTGATGATAGAGCTCCTTACGTATTCATCAGCCTCAGTGATTTATT
ATATAAATATCATAAGAGAATATAAATATCAATTTAAGAGAATAACTTACTCAAATCACTAAGTAATCCACGACTATTATACATTCATACTTTGAGTTTG
GATTAAAAAAAAAATCTTCAAGTATGAGAAAACTATTAAAATAGTTTTATTGAAAAATCATATAAAATAAAAATAAATTTAGTAATAATATAATTAAATA
TGTAAAATAAAATTAAATAAGAAATATATCATTAACCTATAAATTAGAAGTTGAAGAACTTACATTAATTATTTAATAGACACATGTCAAATGCTAAAGT
GATGATGTGTCAATCATATGGAGAGAGTTGACCAACTTTTCATATATATGATTGGTAAGAAAAGTTGTGTGTGGTTGTAGTTGTACTACAAGCTTAGTAG
AAACAAAAGTATTATTGTGTAAAGCATATTGTATTTTTATGTATTAAAATACAGAAGAAACGTGATACAAAATTTGGCGTTTTCCACTAAATCAAAAAGT
GAGCACCATTGTAATCGATGAACAGTAGAATTTTTGTTTTTTCTTTACAGTTGAATAATATAATACTAAATACTAATGAACTCAAATTTTTACATGTGAA
TTTTATGTTTGTTACATGTTATAAACTCAGATAAAAGGTTTCGCTATGGAAACACTAAAACGAAGCTCAAAAGTATGGCTACAAGAGCTTCGTTCAAACC
TAAACATTTTCTGGGGAACAATCGAATCCGAAATCTCCAAAAACGGTGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGCGC
CTCTCTCGCCGGCGTTGACGCTTCCGTATCGCCGGACATCGCTGAGAACGGTTGGAAAACAATCAATACTTGGCTTGCGTTGCAAGTTATTCCCACTGCT
AAACTTGGCGTAGTTCCTCAGCCTCTTGAAGAGATTTTACTTCATACTTGGCCTTATCCTTCTCTCTTAATCGCCGGAAATTACAAAAAGCTTTACAATT
TCATCGACGAGAACGCCGGAGATTGTCTCCGGTTAGGTCAAGAAGAATTCGGGTTGACCCGAGATGAGGCTATTCAAAATCTTCTCTTTGTTTTAGGTTT
TAATGCCTACGGGGGCTTTTCCGTCTTCTTACCTTCTTTGATCGGGAGAATAACCGGCGACAATTCCGGTTTACAGGAGAGGATTAGAACCGAAGTCAGG
AGAGTTTGCGGATCCGGGTCGGATCTTAATTTCAAGACGGTTAACGAAATGGAGCTGGTTAAATCCGTGGTTTACGAAACGCTGCGTTTTAGTCCTCCGG
TTCCGCTGCAATTCGCACGTGCGAGGAAAGATTTTCAGATAAGTTCACACGATGCTGTTTTTGAGGTCAAGAAAGGTGAGCTTCTTTGTGGTTATCAGCC
GCTTGTGATGAGAGACGCTAATGTTTTTGACGAACCGGAGGAATTTAAACCGGACCGGTATGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTAC
TGGTCTAACGGTCCACAAACCGGTACCCCGAGCGCGTCGAACAAACAGTGTGCAGCTAAGGACATTGTCACTCTCACGGCTTCCTTGCTCGTTGCCGATT
TATTTCTCCGGTATGATACGATTACTGGTGACTCCGGTTCAATTAAAGCTGTTGTTAAAGCTAAATAAGTTAAAGATTGATTAGTGTTTAATGTTATGTA
ATCAATCTTCAACGGTTTCATTTGTTCGGAGTGTATAAATTATATGTAAACTAAAATAATCCGAATTGAAACTCAAATTGTTATGTTAGATGGTGTTGCT
ATGTTAGAGAGATTTTAACTGCTTTTTACATTTTATTAAGGATATATGACTCTAATTTTTATGATAGCAAGATAATTTTTGT
AT4G15440.1 Coding Sequence (CDS) 1152 bases
ATGGATCTAGTTGATAAAAGAGATGTTCTCATCGGAGACTTCCGGCCTAGCCTTGGGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTCGACACTACTG
AGCCAAAGCACGCCAAGATAAAAGGTTTCGCTATGGAAACACTAAAACGAAGCTCAAAAGTATGGCTACAAGAGCTTCGTTCAAACCTAAACATTTTCTG
GGGAACAATCGAATCCGAAATCTCCAAAAACGGTGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGCGCCTCTCTCGCCGGC
GTTGACGCTTCCGTATCGCCGGACATCGCTGAGAACGGTTGGAAAACAATCAATACTTGGCTTGCGTTGCAAGTTATTCCCACTGCTAAACTTGGCGTAG
TTCCTCAGCCTCTTGAAGAGATTTTACTTCATACTTGGCCTTATCCTTCTCTCTTAATCGCCGGAAATTACAAAAAGCTTTACAATTTCATCGACGAGAA
CGCCGGAGATTGTCTCCGGTTAGGTCAAGAAGAATTCGGGTTGACCCGAGATGAGGCTATTCAAAATCTTCTCTTTGTTTTAGGTTTTAATGCCTACGGG
GGCTTTTCCGTCTTCTTACCTTCTTTGATCGGGAGAATAACCGGCGACAATTCCGGTTTACAGGAGAGGATTAGAACCGAAGTCAGGAGAGTTTGCGGAT
CCGGGTCGGATCTTAATTTCAAGACGGTTAACGAAATGGAGCTGGTTAAATCCGTGGTTTACGAAACGCTGCGTTTTAGTCCTCCGGTTCCGCTGCAATT
CGCACGTGCGAGGAAAGATTTTCAGATAAGTTCACACGATGCTGTTTTTGAGGTCAAGAAAGGTGAGCTTCTTTGTGGTTATCAGCCGCTTGTGATGAGA
GACGCTAATGTTTTTGACGAACCGGAGGAATTTAAACCGGACCGGTATGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTACTGGTCTAACGGTC
CACAAACCGGTACCCCGAGCGCGTCGAACAAACAGTGTGCAGCTAAGGACATTGTCACTCTCACGGCTTCCTTGCTCGTTGCCGATTTATTTCTCCGGTA
TGATACGATTACTGGTGACTCCGGTTCAATTAAAGCTGTTGTTAAAGCTAAATAA
AT4G15440.1 cDNA Sequence 1743 bases
ATAGAAATAGAAGGCGAAGAGATAATTTCCAAAAACAAGAAAAACCTCTAAGCTCAAAAGATGTTGTTGAGAACGATGGCGGCGACTTCCCCGCGGCCAC
CACCGTCAACATCCCTAACATCTCAGCAGCCACCATCACCCCCCTCACAGCTTCCCCTCCGTACAATGCCGGGATCGTACGGCTGGCCGTTGGTTGGACC
ATTATCGGACCGTTTAGATTCCAAGGACCCGATAAGTTTTTCCGGACAAGAGCTGAGAAGTATAAGAGCACTGTGTTCCGTACAAATATTCCTCCGACGT
TTCCTTTCTTCGGCAACGTTAACCCTAACATCGTCGCCGTTCTTGACGTCAAGTCTTTTAGCCATCTTTTTGACATGGATCTAGTTGATAAAAGAGATGT
TCTCATCGGAGACTTCCGGCCTAGCCTTGGGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTCGACACTACTGAGCCAAAGCACGCCAAGATAAAAGGT
TTCGCTATGGAAACACTAAAACGAAGCTCAAAAGTATGGCTACAAGAGCTTCGTTCAAACCTAAACATTTTCTGGGGAACAATCGAATCCGAAATCTCCA
AAAACGGTGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGCGCCTCTCTCGCCGGCGTTGACGCTTCCGTATCGCCGGACAT
CGCTGAGAACGGTTGGAAAACAATCAATACTTGGCTTGCGTTGCAAGTTATTCCCACTGCTAAACTTGGCGTAGTTCCTCAGCCTCTTGAAGAGATTTTA
CTTCATACTTGGCCTTATCCTTCTCTCTTAATCGCCGGAAATTACAAAAAGCTTTACAATTTCATCGACGAGAACGCCGGAGATTGTCTCCGGTTAGGTC
AAGAAGAATTCGGGTTGACCCGAGATGAGGCTATTCAAAATCTTCTCTTTGTTTTAGGTTTTAATGCCTACGGGGGCTTTTCCGTCTTCTTACCTTCTTT
GATCGGGAGAATAACCGGCGACAATTCCGGTTTACAGGAGAGGATTAGAACCGAAGTCAGGAGAGTTTGCGGATCCGGGTCGGATCTTAATTTCAAGACG
GTTAACGAAATGGAGCTGGTTAAATCCGTGGTTTACGAAACGCTGCGTTTTAGTCCTCCGGTTCCGCTGCAATTCGCACGTGCGAGGAAAGATTTTCAGA
TAAGTTCACACGATGCTGTTTTTGAGGTCAAGAAAGGTGAGCTTCTTTGTGGTTATCAGCCGCTTGTGATGAGAGACGCTAATGTTTTTGACGAACCGGA
GGAATTTAAACCGGACCGGTATGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTACTGGTCTAACGGTCCACAAACCGGTACCCCGAGCGCGTCG
AACAAACAGTGTGCAGCTAAGGACATTGTCACTCTCACGGCTTCCTTGCTCGTTGCCGATTTATTTCTCCGGTATGATACGATTACTGGTGACTCCGGTT
CAATTAAAGCTGTTGTTAAAGCTAAATAAGTTAAAGATTGATTAGTGTTTAATGTTATGTAATCAATCTTCAACGGTTTCATTTGTTCGGAGTGTATAAA
TTATATGTAAACTAAAATAATCCGAATTGAAACTCAAATTGTTATGTTAGATGGTGTTGCTATGTTAGAGAGATTTTAACTGCTTTTTACATTTTATTAA
GGATATATGACTCTAATTTTTATGATAGCAAGATAATTTTTGT