ATIDB : The Arabidopsis thaliana Integrated Database
Names and Synonyms
TOC75-IV
AT4G09080
ATTOC75-IV
F23J3.110
F23J3_110
Gene Ontology Terms
GO:0009707 [AMIGO Graph]
Term : cellular_component, chloroplast outer membrane
Definition : The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope.
GO:0031359 [AMIGO Graph]
Term : cellular_component, integral to chloroplast outer membrane
Definition : Penetrating at least one phospholipid bilayer of the chloroplast outer membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer.
GO:0045036 [AMIGO Graph]
Term : biological_process, protein targeting to chloroplast
Definition : The process of directing proteins towards the chloroplast using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved.
GO:0009662 [AMIGO Graph]
Term : biological_process, etioplast organization and biogenesis
Definition : The assembly and arrangement of the etioplast.
MIPS Functional Catalogue Classifications
| [14] |
PROTEIN FATE (folding, modification, destination) |
| [14.04] |
protein targeting, sorting and translocation |
| [20] |
CELLULAR TRANSPORT, TRANSPORT FACILITATION AND TRANSPORT ROUTES |
| [20.09] |
transport routes |
| [20.09.02] |
chloroplast transport |
| [42] |
BIOGENESIS OF CELLULAR COMPONENTS |
| [42.26] |
plastid |
| [42.26.03] |
chloroplast |
Gene Predictions [*]
Gene Insertions
Flanking Sequence : T-DNA_LB.SALK_036019 [Graphical View|Text]
Location : chromosome 4, base 5805568-5805569
Mapping Score 1
[see FAQ]
Flanking Sequence : T-DNA_LB.SALK_140235.34.50.n [Graphical View|Text]
Location : chromosome 4, base 5805187-5805188
Mapping Score 1
[see FAQ]
Flanking Sequence : T-DNA_LB.SALK_029763 [Graphical View|Text]
Location : chromosome 4, base 5805176-5805177
Mapping Score 2
[see FAQ]
Flanking Sequence : T-DNA_LB.GK-053F03-012302 [Graphical View|Text]
Location : chromosome 4, base 5805137-5805138
Mapping Score 6
[see FAQ]
Flanking Sequence : T-DNA_LB.GK-053F03-012472 [Graphical View|Text]
Location : chromosome 4, base 5805136-5805137
Mapping Score 6
[see FAQ]
Flanking Sequence : T-DNA_LB.SALK_140230.53.25.x [Graphical View|Text]
Location : chromosome 4, base 5805078-5805079
Mapping Score 1
[see FAQ]
Flanking Sequence : T-DNA_LB.GK-168F02-013363 [Graphical View|Text]
Location : chromosome 4, base 5803845-5803846
Mapping Score 1
[see FAQ]
Design Validation Primers
Automatically design primers for insert validation
InterProScan results
Sequences
AT4G09080.1 Sequences
AT4G09080.1, Protein sequence 396 amino acids
MEAVKEAVRKIKSLVIPHADEKDNGIVFEIKLNETDQRVEKWGLDPSLDFFEVTGNCNLG
RPNSEGSNQSLMGSVTIRNIFNPKLDDLLSKIEYVRFLEAVKKPRNRTFKTSFFNSRKLS
PVFTGGPGYEDLVPPMFVGRDCLKATITENLTRQRELTYGVMFEEIITRDENRRISENGL
LLSPDGGISINGPPTTLSGTGIDHIATLQANITRDNTKLVNGAVVGEKNIFQVDQGLGIG
NNFPLFNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCIGDLPSYDVFALGGPNS
VRGYSMGELGAAKNILELGAEIRIPVKNTHVYAFAEHGNDLGSSKDVKGNPTGLYRKMGH
GSSYGLGVKLGMVRAEYTVRHNRGTGALFLRFGERY*
AT4G09080.1 Sequence 2545 bases
AACAATATAGAGAGAAAGAAGTGTGAGAGCTACAAGTTTGAAGAAATCGAGTAGAGAGAGAGACAGATCTAGATTCTTCTTCTTCTTCGTCTTCTTCGTC
AACCTCTAGAAGACTCGTGTAGGTACGTAGCTTTGAATCTCTTCTTCTGTAACCTGAAATTTTGTTAATTCCTCTTGAGAGTGAAGCATTATCGAGTTTG
ATCTTCGAGAAATTGTACATAAATCGCTTGTTTCTCTCGTGTTCTTTCTTTGTACTGATTTCAAAACTTGAATCGCAAAGAACAAGCGATAAGATCAAAA
TCAACTACCAAAATCACTACAGAGAGCTATTTTTCTTTGGATTTTGGTTTTAAACATGTGTTTGATTACGATTCCAGACTGAAATTTGTATCTGAGTCAG
TGGATTTTTTGGTGTTGCCTTGTTGATTCGTTCACGTTGTAGTAGTAGATTTCAGAATTTTGCTTTCGTTGCTTTGAGTTTAGCTTAGGATTTGGCTTTT
AACAGAGTTTCTATTTGAGTAGAATTGTAAAATAGAATTTGATGTCTGCCAAGTGTTTGATGAAATTCCTCTGAGAAATGAACCTTAAGTTATTCTAGTG
TGTATTAATGGATTTCTTCTTTGTTGTTCAGGTTATTGTGATGGAAGCTGTGAAGGAAGCTGTGAGGAAGATTAAGTCCTTAGTCATACCACATGCAGAT
GAGAAAGATAATGGTATTGTTTTTGAGATCAAGCTTAATGAGACAGATCAGAGAGTAGAAAAGTGGGGTCTTGATCCTTCTTTGGTATGTATTGTCTTCT
ACTAAACTTGGCAACTTTTTTATGTTATAAGAGTTTTCTATTGAATTTACTATGTCCTTCGTTTGATTATCTTGCATTATTAGGATTTTTTCGAGGTAAC
AGGGAACTGTAATTTGGGACGTCCAAATAGCGAGGGATCTAATCAGTCTCTCATGGGTTCTGTGACCATTAGGAACATCTTTAATCCTAAGCTGGTACAC
TTGTTTTTACATATGCTTCTGATACCTATCTAGTTTATTTTGTAGTTTGATATTTTGATCCTTTAATACGCTTGGTTTTCTCTTAGGATGATCTTTTGTC
TAAGATTGAGTATGTACGGTTTCTGGAAGCTGTTAAAAAACCTAGAAACCGTACCTTCAAAACGAGCTTCTTCAATAGCAGAAAACTTAGCCCAGTGTTC
ACTGGAGGACCAGGCTATGAGGATCTAGTGCCTCCAATGTTTGTGGGTCGAGATTGTCTTAAAGCTACTATAACTGAGGTAACCAAGTCTCCTATATATA
TAGATAGTCAACTTGTAATCATCTCTCACAAGCACCTTTTTTTTCACGTCCAGAACTTAACCCGTCAGAGAGAACTCACATATGGAGTTATGTTTGAAGA
GATAATAACCCGAGATGAAAACAGGCGAATCTCTGAAAATGGGCTCTTGTTATCGCCTGACGGTGGAATCAGTATTAATGGACCTCCAACAACTCTAAGT
GGTACCGGTATTGACCACATTGCCACTCTACAAGCCAACATAACCCGAGACAACACCAAGCTAGTGAATGGGGCTGTTGTTGGAGAGAAGAATATCTTTC
AGGTTTTGTATCAAATCCCTTGATGTTGGTGTTTTTAACTAAATTAGAGCTTTAATAGTGTACTAACACAAATCGCAGGTGGATCAAGGCTTAGGTATAG
GAAATAATTTTCCGCTCTTCAACCGCCACCAACTATCATTAACAAGTTTCATTCAGCTGAAGCAAGTAGAAGAAGGATCCGATAAACCACAACCACCAGT
TCTAGTCCTCCATGGTCGTTACGGTGGCTGCATAGGCGATCTTCCAAGCTATGATGTTTTTGCTCTTGGTGGACCTAACTCCGTTCGAGGATACAGCATG
GGAGAACTTGGTGCAGCTAAAAACATTCTCGAGGTTAAATATAATTACGAAAAACATGCTTTTGTTTTGGTCTTTCAGTTTATAAAATCTGATAATGCTA
ATTGTATATAGCTTTTTTTTGGTATGTTGCTAATTGTATATAGCTTGGTGCTGAGATTAGAATTCCTGTCAAGAACACACATGTGTATGCATTTGCTGAG
CATGGAAACGATTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCAACAGGGCTTTACAGGAAAATGGGACATGGTTCATCGTATGGTTTGGGTGTGAAAC
TCGGTATGGTGCGAGCTGAATATACTGTACGTCACAATCGTGGAACCGGTGCTCTGTTTCTCAGGTTCGGGGAGAGATACTAAGGTCATGCCATGAAGAC
TTTGTGCTGCTTTCTTTCTTAACTCTAATACTTTGGTTTATAATCCTGATACTCTAGTTATGTAAATGCGTGCATAGCAAGTCATTGAGTTTAGGCATTT
GTTTAAAGCGATAGAAGAGAATAAGAACAAGCCGTTTCATGTCTCTCGTCACGACAGTAAATGTTTAGTTAGATTTGTTTTTGACTTTGAAGAAGTCTGT
TCACTGTAGACGTAGAACACGTACTACATTTACTCATGCCCTCTC
AT4G09080.1 Coding Sequence (CDS) 1188 bases
ATGGAAGCTGTGAAGGAAGCTGTGAGGAAGATTAAGTCCTTAGTCATACCACATGCAGATGAGAAAGATAATGGTATTGTTTTTGAGATCAAGCTTAATG
AGACAGATCAGAGAGTAGAAAAGTGGGGTCTTGATCCTTCTTTGGATTTTTTCGAGGTAACAGGGAACTGTAATTTGGGACGTCCAAATAGCGAGGGATC
TAATCAGTCTCTCATGGGTTCTGTGACCATTAGGAACATCTTTAATCCTAAGCTGGATGATCTTTTGTCTAAGATTGAGTATGTACGGTTTCTGGAAGCT
GTTAAAAAACCTAGAAACCGTACCTTCAAAACGAGCTTCTTCAATAGCAGAAAACTTAGCCCAGTGTTCACTGGAGGACCAGGCTATGAGGATCTAGTGC
CTCCAATGTTTGTGGGTCGAGATTGTCTTAAAGCTACTATAACTGAGAACTTAACCCGTCAGAGAGAACTCACATATGGAGTTATGTTTGAAGAGATAAT
AACCCGAGATGAAAACAGGCGAATCTCTGAAAATGGGCTCTTGTTATCGCCTGACGGTGGAATCAGTATTAATGGACCTCCAACAACTCTAAGTGGTACC
GGTATTGACCACATTGCCACTCTACAAGCCAACATAACCCGAGACAACACCAAGCTAGTGAATGGGGCTGTTGTTGGAGAGAAGAATATCTTTCAGGTGG
ATCAAGGCTTAGGTATAGGAAATAATTTTCCGCTCTTCAACCGCCACCAACTATCATTAACAAGTTTCATTCAGCTGAAGCAAGTAGAAGAAGGATCCGA
TAAACCACAACCACCAGTTCTAGTCCTCCATGGTCGTTACGGTGGCTGCATAGGCGATCTTCCAAGCTATGATGTTTTTGCTCTTGGTGGACCTAACTCC
GTTCGAGGATACAGCATGGGAGAACTTGGTGCAGCTAAAAACATTCTCGAGCTTGGTGCTGAGATTAGAATTCCTGTCAAGAACACACATGTGTATGCAT
TTGCTGAGCATGGAAACGATTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCAACAGGGCTTTACAGGAAAATGGGACATGGTTCATCGTATGGTTTGGG
TGTGAAACTCGGTATGGTGCGAGCTGAATATACTGTACGTCACAATCGTGGAACCGGTGCTCTGTTTCTCAGGTTCGGGGAGAGATACTAA
AT4G09080.1 cDNA Sequence 1584 bases
AACAATATAGAGAGAAAGAAGTGTGAGAGCTACAAGTTTGAAGAAATCGAGTAGAGAGAGAGACAGATCTAGATTCTTCTTCTTCTTCGTCTTCTTCGTC
AACCTCTAGAAGACTCGTGTAGGTTATTGTGATGGAAGCTGTGAAGGAAGCTGTGAGGAAGATTAAGTCCTTAGTCATACCACATGCAGATGAGAAAGAT
AATGGTATTGTTTTTGAGATCAAGCTTAATGAGACAGATCAGAGAGTAGAAAAGTGGGGTCTTGATCCTTCTTTGGATTTTTTCGAGGTAACAGGGAACT
GTAATTTGGGACGTCCAAATAGCGAGGGATCTAATCAGTCTCTCATGGGTTCTGTGACCATTAGGAACATCTTTAATCCTAAGCTGGATGATCTTTTGTC
TAAGATTGAGTATGTACGGTTTCTGGAAGCTGTTAAAAAACCTAGAAACCGTACCTTCAAAACGAGCTTCTTCAATAGCAGAAAACTTAGCCCAGTGTTC
ACTGGAGGACCAGGCTATGAGGATCTAGTGCCTCCAATGTTTGTGGGTCGAGATTGTCTTAAAGCTACTATAACTGAGAACTTAACCCGTCAGAGAGAAC
TCACATATGGAGTTATGTTTGAAGAGATAATAACCCGAGATGAAAACAGGCGAATCTCTGAAAATGGGCTCTTGTTATCGCCTGACGGTGGAATCAGTAT
TAATGGACCTCCAACAACTCTAAGTGGTACCGGTATTGACCACATTGCCACTCTACAAGCCAACATAACCCGAGACAACACCAAGCTAGTGAATGGGGCT
GTTGTTGGAGAGAAGAATATCTTTCAGGTGGATCAAGGCTTAGGTATAGGAAATAATTTTCCGCTCTTCAACCGCCACCAACTATCATTAACAAGTTTCA
TTCAGCTGAAGCAAGTAGAAGAAGGATCCGATAAACCACAACCACCAGTTCTAGTCCTCCATGGTCGTTACGGTGGCTGCATAGGCGATCTTCCAAGCTA
TGATGTTTTTGCTCTTGGTGGACCTAACTCCGTTCGAGGATACAGCATGGGAGAACTTGGTGCAGCTAAAAACATTCTCGAGCTTGGTGCTGAGATTAGA
ATTCCTGTCAAGAACACACATGTGTATGCATTTGCTGAGCATGGAAACGATTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCAACAGGGCTTTACAGGA
AAATGGGACATGGTTCATCGTATGGTTTGGGTGTGAAACTCGGTATGGTGCGAGCTGAATATACTGTACGTCACAATCGTGGAACCGGTGCTCTGTTTCT
CAGGTTCGGGGAGAGATACTAAGGTCATGCCATGAAGACTTTGTGCTGCTTTCTTTCTTAACTCTAATACTTTGGTTTATAATCCTGATACTCTAGTTAT
GTAAATGCGTGCATAGCAAGTCATTGAGTTTAGGCATTTGTTTAAAGCGATAGAAGAGAATAAGAACAAGCCGTTTCATGTCTCTCGTCACGACAGTAAA
TGTTTAGTTAGATTTGTTTTTGACTTTGAAGAAGTCTGTTCACTGTAGACGTAGAACACGTACTACATTTACTCATGCCCTCTC