ATIDB : The Arabidopsis thaliana Integrated Database

Home Genome Browser BLAST Gene Traps Sub-Seq Contact

Names and Synonyms

ATOEP16-4
AT3G62880.2
AT3G62880
F26K9.310
AT3G62880

Gene Ontology Terms

GO:0005744 [AMIGO Graph]
Term : cellular_component, mitochondrial inner membrane presequence translocase complex
Definition : The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor.

GO:0015031 [AMIGO Graph]
Term : biological_process, protein transport
Definition : The directed movement of proteins into, out of, within or between cells.

GO:0009527 [AMIGO Graph]
Term : cellular_component, plastid outer membrane
Definition : The outer, i.e. cytoplasm-facing, lipid bilayer of the plastid envelope.

MIPS Functional Catalogue Classifications

[99] UNCLASSIFIED PROTEINS


Gene Predictions [*]

Functional Class Prediction Accuracy (%age) Predicted by rule
[GO:0003824] catalytic activity 1591/2089 76.16 [Struc GOmanual 1 - Rule911]
[GO:0005215] transporter activity 161/203 79.31 [Seq GOmanual 1 - Rule925]
[GO:0005488] binding 453/516 87.79 [Hom GOmanual 1 - Rule256]
mfc:04 TRANSCRIPTION 10/13 76.92 [Seq mipsmanual 1 - Rule539]
[GO:0005386] carrier activity 32/38 84.21 [Hom GOmanual 2 - Rule571]
[GO:0015399] primary active transporter activity 27/32 84.38 [Hom GOmanual 3 - Rule515]
mfc:04.05.01.04 transcriptional control 76/91 83.52 [Struc mipsmanual 4 - Rule4]
mfc:04.05.01.04 transcriptional control 86/95 90.53 [Hom mipsmanual 4 - Rule11]


Gene Insertions

Flanking Sequence : T-DNA_LB.GK-830H01-025745 [Graphical View|Text]
Location : chromosome 3, base 23256646-23256647
Mapping Score 4 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-830H01-025706 [Graphical View|Text]
Location : chromosome 3, base 23256640-23256641
Mapping Score 2 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_109275.54.80.x [Graphical View|Text]
Location : chromosome 3, base 23256433-23256434
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_109276.43.65.x [Graphical View|Text]
Location : chromosome 3, base 23256432-23256433
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_022589.41.75.x [Graphical View|Text]
Location : chromosome 3, base 23255885-23255886
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_022612.29.30.x [Graphical View|Text]
Location : chromosome 3, base 23255834-23255835
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-837G07-025717 [Graphical View|Text]
Location : chromosome 3, base 23255744-23255745
Mapping Score 5 [see FAQ]

Flanking Sequence : T-DNA_LB.SALK_095363 [Graphical View|Text]
Location : chromosome 3, base 23255659-23255660
Mapping Score 1 [see FAQ]


Design Validation Primers

Automatically design primers for insert validation

InterProScan results


Sequences

AT3G62880.1 Sequences

AT3G62880.1, Protein sequence 136 amino acids
MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG
FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF
SVLANCTRTENPNNTN*
AT3G62880.1 Sequence 1381 bases
ACAAAACAAAAGGGTTTTGTCCTAATTCAATTTTGCAGAGATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTAACCGTCGAGTCAGTTCTC
CGTGTCGCGACGGTAATCACTAGTATCCAATTGAAATTCATGTTTGTGTTAGTGTGTGTATAGATAGATGTCTGAGATTTTTGTTGAAGCTCAGGCCGGT
GGATTATATGGGTTATGCGCCGGACCTCGTGACGCTCGTAAAATAGGTATTGAAATTAGCTTTGATTTAGAGAGTTTTTACACTTTTCAATTCATTAATC
TGTGCTTTGTTGCTGATTTGCTTCGCCAGGTTTAAGCGGCGTTTCTCAGGCTTCCTTTGTGGCGAAATCCATTGGCAGATTCGGATTTCAATGCGGTAAT
TTGCTTCCTCTATTGTTTTTCCACCCAAATTAATCTTCAATGACTATGGAATTTGGGTATAAATCTGTAATTTTGGACTTAAGATAATTCTCTTCTTTGT
CACTAGAAGAAGAATGCTGCATATACTTTTTTTTTGTTTTGAAAGATCATAATTCTCTGTTTTGCTTGCCATGTAATAATATATAATGCAGATTTCTTTT
AGTTGTAATTTTTTTTGGATTAGTTGCTCTGCTCTTCTTTAACTTAGATCTAAATTCTTCAAGTAGTGATTGCTTCTTTAGATTTTGGTATATGCATCAA
GAATTCATTTTTGTTTCAGGTCTTGTAAGTGGTGTGTTTACTATGACACATTGTGGGCTTCAACGATATCGAGGCAAGAATGATTGGGTGAATGCTTTGG
TAGGAGGAGCTGTGGCGGGAGCAGCTGTTGCCATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTCGTCTCTGCTTTTAGTGTTTTGGC
TAATTGCACCAGGACAGAAAACCCAAACAACACTAATTAAGGTGATATTTAGAACACTGAATTTTGCTAATAATGCGAGTGTCTGTCGCAGCCACATTCA
CCGGATATTGAAACTATCTTATAAGCTTGCAGGTCTTTGACAAGTCCATTCAAGAAACTGTATGGAATTGGAACTTGAAGATCAATACACTGACTCTCCG
GTTCGATCCTATTTAGTTGGCTGAACCCGTGGATGGTTCTTCTTTTCTATAGACCACACTTTTGGTCTTGTCTCTCTGTAGTCATCATGTACACACAAAG
TCCCTCGAACCCGAAACCGTATTTGCATCAATGCTTATTACTGTATAATGTTATTTACAAGATAGAGATAGTCATAGAAAAATTAAAACATCAAAACTGA
TTTTTAATAAAGTGTATGTTAATAGCCATGCTGTTTCTTAGGAAAGCCAGTTTATTCACGAATCCACCATTTTTCTACTTC
AT3G62880.1 Coding Sequence (CDS) 408 bases
ATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTAACCGTCGAGTCAGTTCTCCGTGTCGCGACGGCCGGTGGATTATATGGGTTATGCGCCG
GACCTCGTGACGCTCGTAAAATAGGTTTAAGCGGCGTTTCTCAGGCTTCCTTTGTGGCGAAATCCATTGGCAGATTCGGATTTCAATGCGGTCTTGTAAG
TGGTGTGTTTACTATGACACATTGTGGGCTTCAACGATATCGAGGCAAGAATGATTGGGTGAATGCTTTGGTAGGAGGAGCTGTGGCGGGAGCAGCTGTT
GCCATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTCGTCTCTGCTTTTAGTGTTTTGGCTAATTGCACCAGGACAGAAAACCCAAACA
ACACTAATTAA
AT3G62880.1 cDNA Sequence 801 bases
ACAAAACAAAAGGGTTTTGTCCTAATTCAATTTTGCAGAGATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTAACCGTCGAGTCAGTTCTC
CGTGTCGCGACGGCCGGTGGATTATATGGGTTATGCGCCGGACCTCGTGACGCTCGTAAAATAGGTTTAAGCGGCGTTTCTCAGGCTTCCTTTGTGGCGA
AATCCATTGGCAGATTCGGATTTCAATGCGGTCTTGTAAGTGGTGTGTTTACTATGACACATTGTGGGCTTCAACGATATCGAGGCAAGAATGATTGGGT
GAATGCTTTGGTAGGAGGAGCTGTGGCGGGAGCAGCTGTTGCCATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTCGTCTCTGCTTTT
AGTGTTTTGGCTAATTGCACCAGGACAGAAAACCCAAACAACACTAATTAAGGTCTTTGACAAGTCCATTCAAGAAACTGTATGGAATTGGAACTTGAAG
ATCAATACACTGACTCTCCGGTTCGATCCTATTTAGTTGGCTGAACCCGTGGATGGTTCTTCTTTTCTATAGACCACACTTTTGGTCTTGTCTCTCTGTA
GTCATCATGTACACACAAAGTCCCTCGAACCCGAAACCGTATTTGCATCAATGCTTATTACTGTATAATGTTATTTACAAGATAGAGATAGTCATAGAAA
AATTAAAACATCAAAACTGATTTTTAATAAAGTGTATGTTAATAGCCATGCTGTTTCTTAGGAAAGCCAGTTTATTCACGAATCCACCATTTTTCTACTT
C
AT3G62880.2 Sequences

AT3G62880.2, Protein sequence 136 amino acids
MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG
FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF
SVLANCTRTENPNNTN*
AT3G62880.2 Sequence 1394 bases
GGACGGAGAGGTAACAAAACAAAAGGGTTTTGTCCTAATTCAATTTTGCAGAGATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTAACCGT
CGAGTCAGTTCTCCGTGTCGCGACGGTAATCACTAGTATCCAATTGAAATTCATGTTTGTGTTAGTGTGTGTATAGATAGATGTCTGAGATTTTTGTTGA
AGCTCAGGCCGGTGGATTATATGGGTTATGCGCCGGACCTCGTGACGCTCGTAAAATAGGTATTGAAATTAGCTTTGATTTAGAGAGTTTTTACACTTTT
CAATTCATTAATCTGTGCTTTGTTGCTGATTTGCTTCGCCAGGTTTAAGCGGCGTTTCTCAGGCTTCCTTTGTGGCGAAATCCATTGGCAGATTCGGATT
TCAATGCGGTAATTTGCTTCCTCTATTGTTTTTCCACCCAAATTAATCTTCAATGACTATGGAATTTGGGTATAAATCTGTAATTTTGGACTTAAGATAA
TTCTCTTCTTTGTCACTAGAAGAAGAATGCTGCATATACTTTTTTTTTGTTTTGAAAGATCATAATTCTCTGTTTTGCTTGCCATGTAATAATATATAAT
GCAGATTTCTTTTAGTTGTAATTTTTTTTGGATTAGTTGCTCTGCTCTTCTTTAACTTAGATCTAAATTCTTCAAGTAGTGATTGCTTCTTTAGATTTTG
GTATATGCATCAAGAATTCATTTTTGTTTCAGGTCTTGTAAGTGGTGTGTTTACTATGACACATTGTGGGCTTCAACGATATCGAGGCAAGAATGATTGG
GTGAATGCTTTGGTAGGAGGAGCTGTGGCGGGAGCAGCTGTTGCCATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTCGTCTCTGCTT
TTAGTGTTTTGGCTAATTGCACCAGGACAGAAAACCCAAACAACACTAATTAAGGTGATATTTAGAACACTGAATTTTGCTAATAATGCGAGTGTCTGTC
GCAGCCACATTCACCGGATATTGAAACTATCTTATAAGCTTGCAGGTCTTTGACAAGTCCATTCAAGAAACTGTATGGAATTGGAACTTGAAGATCAATA
CACTGACTCTCCGGTTCGATCCTATTTAGTTGGCTGAACCCGTGGATGGTTCTTCTTTTCTATAGACCACACTTTTGGTCTTGTCTCTCTGTAGTCATCA
TGTACACACAAAGTCCCTCGAACCCGAAACCGTATTTGCATCAATGCTTATTACTGTATAATGTTATTTACAAGATAGAGATAGTCATAGAAAAATTAAA
ACATCAAAACTGATTTTTAATAAAGTGTATGTTAATAGCCATGCTGTTTCTTAGGAAAGCCAGTTTATTCACGAATCCACCATTTTTCTACTTC
AT3G62880.2 Coding Sequence (CDS) 408 bases
ATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTAACCGTCGAGTCAGTTCTCCGTGTCGCGACGGCCGGTGGATTATATGGGTTATGCGCCG
GACCTCGTGACGCTCGTAAAATAGGTTTAAGCGGCGTTTCTCAGGCTTCCTTTGTGGCGAAATCCATTGGCAGATTCGGATTTCAATGCGGTCTTGTAAG
TGGTGTGTTTACTATGACACATTGTGGGCTTCAACGATATCGAGGCAAGAATGATTGGGTGAATGCTTTGGTAGGAGGAGCTGTGGCGGGAGCAGCTGTT
GCCATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCTCGTCTCTGCTTTTAGTGTTTTGGCTAATTGCACCAGGACAGAAAACCCAAACA
ACACTAATTAA
AT3G62880.2 cDNA Sequence 821 bases
GGACGGAGAGGTAACAAAACAAAAGGGTTTTGTCCTAATTCAATTTTGCAGAGATGGAGGAAGAATTGCTCTCCGCCGTGCCGTGCTCTTCCCTAACCGT
CGAGTCAGTTCTCCGTGTCGCGACGGCCGGTGGATTATATGGGTTATGCGCCGGACCTCGTGACGCTCGTAAAATAGGTTTAAGCGGCGTTTCTCAGGCT
TCCTTTGTGGCGAAATCCATTGGCAGATTCGGATTTCAATGCGGTCTTGTAAGTGGTGTGTTTACTATGACACATTGTGGGCTTCAACGATATCGAGGCA
AGAATGATTGGGTGAATGCTTTGGTAGGAGGAGCTGTGGCGGGAGCAGCTGTTGCCATTAGCACAAGAAACTGGACACAGGTTGTTGGCATGGCTGGCCT
CGTCTCTGCTTTTAGTGTTTTGGCTAATTGCACCAGGACAGAAAACCCAAACAACACTAATTAAGCTTGCAGGTCTTTGACAAGTCCATTCAAGAAACTG
TATGGAATTGGAACTTGAAGATCAATACACTGACTCTCCGGTTCGATCCTATTTAGTTGGCTGAACCCGTGGATGGTTCTTCTTTTCTATAGACCACACT
TTTGGTCTTGTCTCTCTGTAGTCATCATGTACACACAAAGTCCCTCGAACCCGAAACCGTATTTGCATCAATGCTTATTACTGTATAATGTTATTTACAA
GATAGAGATAGTCATAGAAAAATTAAAACATCAAAACTGATTTTTAATAAAGTGTATGTTAATAGCCATGCTGTTTCTTAGGAAAGCCAGTTTATTCACG
AATCCACCATTTTTCTACTTC