ATIDB : The Arabidopsis thaliana Integrated Database

Home Genome Browser BLAST Gene Traps Sub-Seq Contact

Names and Synonyms

AT3G17970.1
AT3G17960
AT3G17970
MEB5.19

Gene Ontology Terms

GO:0012505 [AMIGO Graph]
Term : cellular_component, endomembrane system
Definition : A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles.

MIPS Functional Catalogue Classifications

[99] UNCLASSIFIED PROTEINS


Gene Predictions [*]

Functional Class Prediction Accuracy (%age) Predicted by rule
[GO:0003824] catalytic activity 428/458 93.45 [Scop GOmanual 1 - Rule366]
[GO:0005488] binding 466/619 75.28 [Interpro GOmanual 1 - Rule235]
[GO:0005488] binding 453/516 87.79 [Hom GOmanual 1 - Rule256]
[GO:0003700] transcription factor activity 300/346 86.71 [Hom GOmanual 4 - Rule50]
[GO:0042578] phosphoric ester hydrolase activity 16/17 94.12 [Hom GOmanual 4 - Rule433]
mfc:04.05.01.04 transcriptional control 76/91 83.52 [Struc mipsmanual 4 - Rule4]
[GO:0016788] hydrolase activity, acting on ester bonds 7/9 77.78 [Composite GOmanual 3 - Rule564]
mfc:04.05.01.04 transcriptional control 91/105 86.67 [Composite mipsmanual 4 - Rule6]


Gene Insertions

Flanking Sequence : T-DNA_LB.SALK_146190.18.00.x [Graphical View|Text]
Location : chromosome 3, base 6151877-6151878
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-764C01-024030 [Graphical View|Text]
Location : chromosome 3, base 6150842-6150843
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-763C01-023908 [Graphical View|Text]
Location : chromosome 3, base 6150498-6150499
Mapping Score 5 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-624B07-022319 [Graphical View|Text]
Location : chromosome 3, base 6148124-6148125
Mapping Score 5 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-624B07-022001 [Graphical View|Text]
Location : chromosome 3, base 6148113-6148114
Mapping Score 2 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-624B07-022315 [Graphical View|Text]
Location : chromosome 3, base 6148113-6148114
Mapping Score 2 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-646G11-023221 [Graphical View|Text]
Location : chromosome 3, base 6148113-6148114
Mapping Score 5 [see FAQ]


Design Validation Primers

Automatically design primers for insert validation

InterProScan results

IPR011990 Tetratricopeptide-like helical [ Gene3D, no description, G3D.1.25.40.10, score, 7.6e-31] IPR000120 Amidase [ HMMPanther, AMIDASE-RELATED, PTHR11895, score, 4.1e-280] IPR001440 TPR repeat [ HMMSmart, no description, SM00028, score, 0.33] IPR001440 TPR repeat [ HMMSmart, no description, SM00028, score, 0.00011] IPR001440 TPR repeat [ HMMSmart, no description, SM00028, score, 8.6e-05] IPR001440 TPR repeat [ ProfileScan, TPR, PS50005, score, 7.228] IPR001440 TPR repeat [ ProfileScan, TPR_REGION, PS50293, score, 22.364] IPR001440 TPR repeat [ ProfileScan, TPR, PS50005, score, 8.113] IPR001440 TPR repeat [ ProfileScan, TPR, PS50005, score, 10.384]
Sequences

AT3G17970.1 Sequences

AT3G17970.1, Protein sequence 589 amino acids
MASQAANLWVLLGLGLAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTG
LTFAVSDVFDITGYVTGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSI
SGENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGF
KSSYGAISNTGIIPVSSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCF
QLLKIPVDRITQVVTKSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTS
RLLANVMQLLQRHEFLQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETR
VAIGSLLKDDGILVIPTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGH
HEKCPISVSFIGRHGGDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEK
GNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKK
NVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLSAERLRKFQ*
AT3G17970.1 Sequence 4014 bases
CTTCTCCTTAGGGTCTATCTCTCTTATCTTAAGCAGCAGCAGCAGCAGCTAGAACAAAAACGTCACCGATGGCGTCTCAAGCTGCGAATCTCTGGGTTCT
TCTAGGTTTAGGTCTCGCTGGGATTCTTATGCTTACCAAAAAGCTGAAGAAGACCGTCCGTGAAGATTTCGGCGCTTTTATCGATAAACTCATGCTTCTT
CCCCCTCCGCAACCTGCTCCTCCCAAAGCTCCTCATCCTCTCACCGGTCTAACCTTTGCCGTTTCCGACGTGTGAGTCTCCGTTGACTTGTTTCCCCCTT
TCTTCTCCCATATGTTTATCATATCTATATTTGGGGGTTTAGCTGAATGATTTTTTCCTTGGGTAGAGTCAAAATTTTGTTTGACAAATGTTGGAATCTG
CGTTGACTCGACTCGTAATCTTCTCCGGCGCACTACATGTCTGATTCTGAGCTTTCGAAAGTATGGTTGATTGATTTTGAGCCGTTTCACTGAAAATTGT
GTTTGTTGTAGATTCAAATGTGTGTGTGTGTGTGTGTGTGTCTGCTAGTTTTGTCAAACTCATTTCAAATCGATACTTGTTGAATCTGTTCATTGGAAGG
CTCTACTGTTTGATCTCTGTTGCTAGGTGTTTGTATGTTTTAGATTCGTCACCAAGTTTGACCTCGACTTATTCATGGAGTCCTACTTATAACTGTCTCA
ACATGTTGATTGACTATTTATCTAATCTGTGTATATCTCTCATTCTCTTCTATGATCTTTTGACTTTTGAAGTTCTTGAAAAGCTAATTTACTCTTTCTT
TCCTTTTCATTTGTTTTCCAGATTCGATATTACAGGGTATGTGACTGGATTTGGTCATCCAGACTGGGTCAGGACCCATGAAGCTGCTTCGTCAACATCT
CCTGTGGTTTCAACTCTCGTTGAAGGTGGAGCCACTTGTGTTGGAAAAACTGTAGTTGATGAGTTTGCGTTTAGGTTTGTCTCTGTTTCATAATGTTAAA
TTGTTACCTGTATCAGGATTCAGATTGTGATTCCAGTGTTGAAATTTTTATTTTATCAGGATGTTAGTATATTAATTCCTTTGTTTGGCTGTTTTCATTT
TCTTCAGTATTAGTGGAGAAAACAAGCATTACGATTCACCTACAAATCCTGCAGCTCCTACTCGTATTCCTGGTGGCGCTTGCAGTGGAGCTGCTGTAGC
CGTAGCAACAAATGCTGTGGATTTTGCTCTAGGTGAGTTCAGTAGCTACTTTTTTCCTTGTTTGGACAATTTGGTATGAGATAACCGTATCTTTGAGAAA
CAAAACATTGCATAAACTTTCAAAACATGGTCAATAATCTTCCTTAGAAAATTTCTGAAACGATTGATAATTTATTTATATTGCAGAAACTTATTTGGCA
TCTAATAGAATTGCTTGATTTAGACTCTTATGGCTATATGGTAAGATAGTTCCATGCGGATTTATAATTTATATGGTAGTCTGTCATTGGCTCCTCCTAT
CAGTATCTAAAATTTCAACTGTCTACTGGTTGGTTCGGTTTCAATTGTTTTCAGAGTATAGTTTTGATTACTTGCATCTTTGCAGGCATCGACACAGTTG
GCGGGGTAAGAGTGCCTGCTGGATACTGTGGCGTTCTTGGATTCAAATCTTCTTATGGGGCTATTTCAAACACCGGAATCATACCAGTATCTTCAAGTCT
TGACTCTGTTGGTATGGATATATAAATCTTTGAATTATACTGTTTGTGGTGGAATGATTTGGATCTTATATAGGCTAGGTTTCAATTGTTGTATAATCAC
ATTGCAAGATTTAGATGCCTTTGTTCGTATGACTAATTTATATTTAGGACCATTAAATGAGCATTACGTTGATTCTGATCAATAGATTTTGGCTTCAGGA
TGGTTTGCCCGCGATCCAAACACCCTACGTCGTGTTGGCCATGTACTCTTGCAACTTCCATTTGCCACTCAACGGAATCCAAGGCAAATCATACTAGCTG
ATGACTGTTTTCAGCTGTTAAAGATCCCTGTGGATCGGATTACCCAGGTGGTGACCAAATCAGCTGAAAAGCTTTTTGGAAGTATGCCCTTTACTCTCCC
TGAAGATCCTCCAGTCTCTGTTAGAAATTCTGATTATAATAGCATTATCTTGTTTTATATTTAGGACAATTGCTAAAGCATCAGAACTTGGAGACCTATT
TTGAAACTAAAGTTCCTAGCTTGAAAGAGTTCGCTAGGACAAAAGCCATTGCTAACACGAAGGTCTCAACATCGAGACTACTGGCGAATGTGATGCAGCT
CCTTCAAAGGTGTGCCTATTGTTTATTCACCTACAGAGGATGAAAATATCTTAGTTTTGAACACTCTATAACAATATTGGCATTGTAGGCACGAGTTCCT
TCAAAATCATGGGGATTGGATCAACACAGTGAAGCCAGCCATTGATCCTGTGATTTTATCACAAGTGTGTGAGAACCCAGAACTAACCAATGAAGAGACT
GAGAACCTGAATGCTATCAGAAACGAGACTCGAGTGGCTATTGGTTCACTTCTCAAGGTATTCCTGCTCTTCCATGACATGTCCACAACTTGAGCGAGTT
AGTTTATATGTCTCTTGACTAATCTCTAATGGTTCCCAACTCTGTAACGTTATGTATCAAGGATGATGGCATTCTGGTAATTCCAACATTGCCAGCTGTT
CCTCCAAAACTTGGTAGCAAGGAGATAACATCTGAAGACTATCAAAACCGAGCTTCAAGTCTGCTTAGCATTGCTAGCATATCAGGATGTTGTCAGGTTA
AATCTCTCTCTTTCTCTCTCTCACCTGCCATGCTAGTAAAGTTCCCCTCACACATGTTAAAAGCAACCACTGACCAGTCAGTGTTAGCAAAACCAATCCA
CAGTATATGTGTCTTACATTTATCGTGCTGATGATTCAGGTGACTGTGCCACTCGGACATCATGAGAAATGCCCTATTTCAGTTTCTTTCATAGGAAGAC
ACGGTGGTGACCGCTTTTTACTAGATACAGTGCAGACAATGTATCCATCTTTGCAAGAGTACTCGAGTATTGTTACCGATCCCAAATCTTCTAAAAAGGC
TATCACCAAAGAAGAGTCAGCCGAGATTGCCAAAGAGAAGGTCAATTAATATCCATTGCATGTCTCATTTTCTTAATGGCATTATCATCCATAATCTAAT
GTGGTTATTATATCTTTGTGTCCCGTGATTATGTAAACCAGGGTAACCAAGCGTTCAAAGAGAAACTATGGCAGAAAGCTATTGGTCTATACTCAGAAGC
TATAAAGCTAAGTGACAACAATGCTACCTATTACAGTAACAGAGCTGCTGCATATCTTGAACTTGGAGGGTAAATGTTTCTCAGATCCTTAAAAATACTT
TTTAGTGAGCAAATCTTTCTATGTGGCATTGCCTTGACAAATCATTTACATACAGCTTTCTTCAAGCCGAAGAAGACTGTACCAAAGCCATCACCCTCGA
CAAGAAGGTAACTTTCATTAAAACACAGAAACAGGTTTCTCTTGAAAAAAAAACACTCTTTACTTTGTAAGAACACACAACACAAAGATCGTTTTTGATT
TCTTTCAGAATGTTAAAGCCTATTTACGAAGAGGAACCGCAAGAGAAATGTTAGGCGATTGCAAGGGAGCCATAGAAGGTAAGCTTTAAAGAACATAATC
TGATTGTTTTTTCGCCTTGTAGAATCTGGCAGAATATAACATAAACTCTGCAGATTTCAGATACGCACTTGTGCTGGAACCAAACAACAAACGAGCGTCT
CTCTCAGCAGAGAGACTGAGAAAATTCCAGTGAGCTTCTTTTGTCCGTACCTCACCGATCATTGAGAAAACGTTTGTTCCTTAGAATTTGTCCAAGAGTA
TAGGCCAATTTTGTCAACACTTGTCTTTTGCGTCTGATATTTAGGCATTTTATCTAGAGATACCTTTTGCAAGTCCGCCGAGAATGGAAAATTATAATAT
CCGATGTTTATTTT
AT3G17970.1 Coding Sequence (CDS) 1767 bases
ATGGCGTCTCAAGCTGCGAATCTCTGGGTTCTTCTAGGTTTAGGTCTCGCTGGGATTCTTATGCTTACCAAAAAGCTGAAGAAGACCGTCCGTGAAGATT
TCGGCGCTTTTATCGATAAACTCATGCTTCTTCCCCCTCCGCAACCTGCTCCTCCCAAAGCTCCTCATCCTCTCACCGGTCTAACCTTTGCCGTTTCCGA
CGTATTCGATATTACAGGGTATGTGACTGGATTTGGTCATCCAGACTGGGTCAGGACCCATGAAGCTGCTTCGTCAACATCTCCTGTGGTTTCAACTCTC
GTTGAAGGTGGAGCCACTTGTGTTGGAAAAACTGTAGTTGATGAGTTTGCGTTTAGTATTAGTGGAGAAAACAAGCATTACGATTCACCTACAAATCCTG
CAGCTCCTACTCGTATTCCTGGTGGCGCTTGCAGTGGAGCTGCTGTAGCCGTAGCAACAAATGCTGTGGATTTTGCTCTAGGCATCGACACAGTTGGCGG
GGTAAGAGTGCCTGCTGGATACTGTGGCGTTCTTGGATTCAAATCTTCTTATGGGGCTATTTCAAACACCGGAATCATACCAGTATCTTCAAGTCTTGAC
TCTGTTGGATGGTTTGCCCGCGATCCAAACACCCTACGTCGTGTTGGCCATGTACTCTTGCAACTTCCATTTGCCACTCAACGGAATCCAAGGCAAATCA
TACTAGCTGATGACTGTTTTCAGCTGTTAAAGATCCCTGTGGATCGGATTACCCAGGTGGTGACCAAATCAGCTGAAAAGCTTTTTGGAAGACAATTGCT
AAAGCATCAGAACTTGGAGACCTATTTTGAAACTAAAGTTCCTAGCTTGAAAGAGTTCGCTAGGACAAAAGCCATTGCTAACACGAAGGTCTCAACATCG
AGACTACTGGCGAATGTGATGCAGCTCCTTCAAAGGCACGAGTTCCTTCAAAATCATGGGGATTGGATCAACACAGTGAAGCCAGCCATTGATCCTGTGA
TTTTATCACAAGTGTGTGAGAACCCAGAACTAACCAATGAAGAGACTGAGAACCTGAATGCTATCAGAAACGAGACTCGAGTGGCTATTGGTTCACTTCT
CAAGGATGATGGCATTCTGGTAATTCCAACATTGCCAGCTGTTCCTCCAAAACTTGGTAGCAAGGAGATAACATCTGAAGACTATCAAAACCGAGCTTCA
AGTCTGCTTAGCATTGCTAGCATATCAGGATGTTGTCAGGTGACTGTGCCACTCGGACATCATGAGAAATGCCCTATTTCAGTTTCTTTCATAGGAAGAC
ACGGTGGTGACCGCTTTTTACTAGATACAGTGCAGACAATGTATCCATCTTTGCAAGAGTACTCGAGTATTGTTACCGATCCCAAATCTTCTAAAAAGGC
TATCACCAAAGAAGAGTCAGCCGAGATTGCCAAAGAGAAGGGTAACCAAGCGTTCAAAGAGAAACTATGGCAGAAAGCTATTGGTCTATACTCAGAAGCT
ATAAAGCTAAGTGACAACAATGCTACCTATTACAGTAACAGAGCTGCTGCATATCTTGAACTTGGAGGCTTTCTTCAAGCCGAAGAAGACTGTACCAAAG
CCATCACCCTCGACAAGAAGAATGTTAAAGCCTATTTACGAAGAGGAACCGCAAGAGAAATGTTAGGCGATTGCAAGGGAGCCATAGAAGATTTCAGATA
CGCACTTGTGCTGGAACCAAACAACAAACGAGCGTCTCTCTCAGCAGAGAGACTGAGAAAATTCCAGTGA
AT3G17970.1 cDNA Sequence 2019 bases
CTTCTCCTTAGGGTCTATCTCTCTTATCTTAAGCAGCAGCAGCAGCAGCTAGAACAAAAACGTCACCGATGGCGTCTCAAGCTGCGAATCTCTGGGTTCT
TCTAGGTTTAGGTCTCGCTGGGATTCTTATGCTTACCAAAAAGCTGAAGAAGACCGTCCGTGAAGATTTCGGCGCTTTTATCGATAAACTCATGCTTCTT
CCCCCTCCGCAACCTGCTCCTCCCAAAGCTCCTCATCCTCTCACCGGTCTAACCTTTGCCGTTTCCGACGTATTCGATATTACAGGGTATGTGACTGGAT
TTGGTCATCCAGACTGGGTCAGGACCCATGAAGCTGCTTCGTCAACATCTCCTGTGGTTTCAACTCTCGTTGAAGGTGGAGCCACTTGTGTTGGAAAAAC
TGTAGTTGATGAGTTTGCGTTTAGTATTAGTGGAGAAAACAAGCATTACGATTCACCTACAAATCCTGCAGCTCCTACTCGTATTCCTGGTGGCGCTTGC
AGTGGAGCTGCTGTAGCCGTAGCAACAAATGCTGTGGATTTTGCTCTAGGCATCGACACAGTTGGCGGGGTAAGAGTGCCTGCTGGATACTGTGGCGTTC
TTGGATTCAAATCTTCTTATGGGGCTATTTCAAACACCGGAATCATACCAGTATCTTCAAGTCTTGACTCTGTTGGATGGTTTGCCCGCGATCCAAACAC
CCTACGTCGTGTTGGCCATGTACTCTTGCAACTTCCATTTGCCACTCAACGGAATCCAAGGCAAATCATACTAGCTGATGACTGTTTTCAGCTGTTAAAG
ATCCCTGTGGATCGGATTACCCAGGTGGTGACCAAATCAGCTGAAAAGCTTTTTGGAAGACAATTGCTAAAGCATCAGAACTTGGAGACCTATTTTGAAA
CTAAAGTTCCTAGCTTGAAAGAGTTCGCTAGGACAAAAGCCATTGCTAACACGAAGGTCTCAACATCGAGACTACTGGCGAATGTGATGCAGCTCCTTCA
AAGGCACGAGTTCCTTCAAAATCATGGGGATTGGATCAACACAGTGAAGCCAGCCATTGATCCTGTGATTTTATCACAAGTGTGTGAGAACCCAGAACTA
ACCAATGAAGAGACTGAGAACCTGAATGCTATCAGAAACGAGACTCGAGTGGCTATTGGTTCACTTCTCAAGGATGATGGCATTCTGGTAATTCCAACAT
TGCCAGCTGTTCCTCCAAAACTTGGTAGCAAGGAGATAACATCTGAAGACTATCAAAACCGAGCTTCAAGTCTGCTTAGCATTGCTAGCATATCAGGATG
TTGTCAGGTGACTGTGCCACTCGGACATCATGAGAAATGCCCTATTTCAGTTTCTTTCATAGGAAGACACGGTGGTGACCGCTTTTTACTAGATACAGTG
CAGACAATGTATCCATCTTTGCAAGAGTACTCGAGTATTGTTACCGATCCCAAATCTTCTAAAAAGGCTATCACCAAAGAAGAGTCAGCCGAGATTGCCA
AAGAGAAGGGTAACCAAGCGTTCAAAGAGAAACTATGGCAGAAAGCTATTGGTCTATACTCAGAAGCTATAAAGCTAAGTGACAACAATGCTACCTATTA
CAGTAACAGAGCTGCTGCATATCTTGAACTTGGAGGCTTTCTTCAAGCCGAAGAAGACTGTACCAAAGCCATCACCCTCGACAAGAAGAATGTTAAAGCC
TATTTACGAAGAGGAACCGCAAGAGAAATGTTAGGCGATTGCAAGGGAGCCATAGAAGATTTCAGATACGCACTTGTGCTGGAACCAAACAACAAACGAG
CGTCTCTCTCAGCAGAGAGACTGAGAAAATTCCAGTGAGCTTCTTTTGTCCGTACCTCACCGATCATTGAGAAAACGTTTGTTCCTTAGAATTTGTCCAA
GAGTATAGGCCAATTTTGTCAACACTTGTCTTTTGCGTCTGATATTTAGGCATTTTATCTAGAGATACCTTTTGCAAGTCCGCCGAGAATGGAAAATTAT
AATATCCGATGTTTATTTT