ATIDB : The Arabidopsis thaliana Integrated Database

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Names and Synonyms

ATOEP16-L
AT2G28900
ATOEP16-1
F8N16.19
F8N16_19

Gene Ontology Terms

GO:0005744 [AMIGO Graph]
Term : cellular_component, mitochondrial inner membrane presequence translocase complex
Definition : The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor.

GO:0015031 [AMIGO Graph]
Term : biological_process, protein transport
Definition : The directed movement of proteins into, out of, within or between cells.

GO:0009611 [AMIGO Graph]
Term : biological_process, response to wounding
Definition : A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.

GO:0009753 [AMIGO Graph]
Term : biological_process, response to jasmonic acid stimulus
Definition : A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.

GO:0009527 [AMIGO Graph]
Term : cellular_component, plastid outer membrane
Definition : The outer, i.e. cytoplasm-facing, lipid bilayer of the plastid envelope.

MIPS Functional Catalogue Classifications

[99] UNCLASSIFIED PROTEINS


Gene Predictions [*]

Functional Class Prediction Accuracy (%age) Predicted by rule
[GO:0003824] catalytic activity 1591/2089 76.16 [Struc GOmanual 1 - Rule911]
[GO:0005488] binding 453/516 87.79 [Hom GOmanual 1 - Rule256]
[GO:0000166] nucleotide binding 7/9 77.78 [Seq GOmanual 2 - Rule1424]
[GO:0015399] primary active transporter activity 27/32 84.38 [Hom GOmanual 3 - Rule515]
[GO:0005279] amino acid-polyamine transporter activity 17/22 77.27 [Hom GOmanual 4 - Rule545]
[GO:0015171] amino acid transporter activity 17/22 77.27 [Hom GOmanual 4 - Rule546]
mfc:04.05.01.04 transcriptional control 76/91 83.52 [Struc mipsmanual 4 - Rule4]
mfc:04.05.01.04 transcriptional control 86/95 90.53 [Hom mipsmanual 4 - Rule11]
[GO:0015291] porter activity 79/104 75.96 [Composite GOmanual 4 - Rule639]


Gene Insertions

Flanking Sequence : T-DNA_LB.SALK_024018.50.90.x [Graphical View|Text]
Location : chromosome 2, base 12422306-12422307
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-839B11-025505 [Graphical View|Text]
Location : chromosome 2, base 12421473-12421474
Mapping Score 1 [see FAQ]

Flanking Sequence : T-DNA_LB.GK-839B11-025536 [Graphical View|Text]
Location : chromosome 2, base 12421309-12421310
Mapping Score 6 [see FAQ]


Design Validation Primers

Automatically design primers for insert validation

InterProScan results


Sequences

AT2G28900.1 Sequences

AT2G28900.1, Protein sequence 148 amino acids
MPSSTFSGTVSTPKLSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSK
STLEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKK
GKDTIVIDAILGGALATASQFVNNHYFY*
AT2G28900.1 Sequence 1465 bases
ATCCACCGTTAAAAGCCCCTTTATATCCCAAGAAATAGGTGAACTTGTTACAGAACAAGCAAAGATCAAAGAGAAAAATATCCCAAAACCAAAAACAGAG
GAAGAAAGAAGAAGAAAAGATGCCTTCAAGCACATTCTCCGGGACTGTTAGCACGCCGAAGCTGTCGGTGGCAGTGGACATGGGAAACCCTTTTCTCAAT
CTCACCGTTGATGCCTTCCTCAAGATCGGAGCTGTAAAAAAACTCATCTCTTTTTGATGGATCATTTTGTTAATTTGTGATCTGTTTCTCATTGTTGTTT
TCTTCTTTGATGGGTTTTAGGTTGGAGTCACTAAATCTCTTGCAGAAGACACTTACAAGGCCATCGACAAAGGTAAGCCCTTAACTTTATCAAACACAAC
ACATAAGTGTTAGTTCTTGTTCTGTCTAGTTTTATTATGTAACTTTACTGTTGTGTTTTTGGTGATGTTGATGAATTAGTAAAGGCATAGAAGAATGTAT
TGTATATATATAGAACAACTAGCACACACCTTTGATGGATCTGTTTTTGTGCTTATCATTAATTACCTTTGTTTGTTGGAGCTGCAAAATATCATTTTTT
ACTCCATGGTTCATATATTGTAGGGAGTCTCTCCAAGAGCACTTTGGAGCATGCGGTGAGTACACTACTGAATCAAATCTATGTGTTTTGGTTTGAAGAC
ATGTGTAATCTTTTTTTAAGTTTCTGAAATTTTTGTTGAATATTGTTGCAGCTTAAGAAGTTGTGTAAAGAAGGTGTTTACTGGGGTAAGTTGCTTTCTA
ATTTATCTCATTTTTGAGTGATTAAGAAAAGTCTAAAGTTTGTGGCATATGAATATGATCAGGAGCTGCTGGTGGAGTGTACATTGGAACAGAATACGGA
ATCGAACGTATCCGTGGCAGCAGAGATTGGGTATACTACTAATACATTTTCACACTCTTTTCAATTCTTACAGTTTTGTAGAACTAATTGGTTGAGTTGT
TTGTATCAGAAAAACGCAATGTTAGCAGGCGCGGCGACAGGAGCAGTGCTCTCAGCGGTTGGTAAGAAAGGCAAAGACACTATTGTGATCGATGCCATTC
TTGGTGGCGCGCTTGCAACCGCTTCTCAGTTCGTTAACAATCATTATTTCTACTGATTCTCCATCTTCCTTTAGGGACCAATTTGGTTCATATGGTGTGG
ATTCCTTTGTTTACTCTTTAAATAATAATAAAAAACAATGTAGTGTTTTTGAAATGAATACATTCGAGTATTGTTGACGTTAAATATGCAATTTAGCTAT
TTTCAATATGAGAAATGCCTCGAAATATGAAAATTTGTATAGAGAGTAGTAATGATTTTGTGGTTTCTATAAAACTCTCTAATGTGTATACTCAACCATA
ACGAGTTGTCCGATGTGTATTTAGCAACTATCACTATAGTTAAAGAGAGAGAGTAATTAAGTCTT
AT2G28900.1 Coding Sequence (CDS) 444 bases
ATGCCTTCAAGCACATTCTCCGGGACTGTTAGCACGCCGAAGCTGTCGGTGGCAGTGGACATGGGAAACCCTTTTCTCAATCTCACCGTTGATGCCTTCC
TCAAGATCGGAGCTGTTGGAGTCACTAAATCTCTTGCAGAAGACACTTACAAGGCCATCGACAAAGGGAGTCTCTCCAAGAGCACTTTGGAGCATGCGCT
TAAGAAGTTGTGTAAAGAAGGTGTTTACTGGGGAGCTGCTGGTGGAGTGTACATTGGAACAGAATACGGAATCGAACGTATCCGTGGCAGCAGAGATTGG
AAAAACGCAATGTTAGCAGGCGCGGCGACAGGAGCAGTGCTCTCAGCGGTTGGTAAGAAAGGCAAAGACACTATTGTGATCGATGCCATTCTTGGTGGCG
CGCTTGCAACCGCTTCTCAGTTCGTTAACAATCATTATTTCTACTGA
AT2G28900.1 cDNA Sequence 875 bases
ATCCACCGTTAAAAGCCCCTTTATATCCCAAGAAATAGGTGAACTTGTTACAGAACAAGCAAAGATCAAAGAGAAAAATATCCCAAAACCAAAAACAGAG
GAAGAAAGAAGAAGAAAAGATGCCTTCAAGCACATTCTCCGGGACTGTTAGCACGCCGAAGCTGTCGGTGGCAGTGGACATGGGAAACCCTTTTCTCAAT
CTCACCGTTGATGCCTTCCTCAAGATCGGAGCTGTTGGAGTCACTAAATCTCTTGCAGAAGACACTTACAAGGCCATCGACAAAGGGAGTCTCTCCAAGA
GCACTTTGGAGCATGCGCTTAAGAAGTTGTGTAAAGAAGGTGTTTACTGGGGAGCTGCTGGTGGAGTGTACATTGGAACAGAATACGGAATCGAACGTAT
CCGTGGCAGCAGAGATTGGAAAAACGCAATGTTAGCAGGCGCGGCGACAGGAGCAGTGCTCTCAGCGGTTGGTAAGAAAGGCAAAGACACTATTGTGATC
GATGCCATTCTTGGTGGCGCGCTTGCAACCGCTTCTCAGTTCGTTAACAATCATTATTTCTACTGATTCTCCATCTTCCTTTAGGGACCAATTTGGTTCA
TATGGTGTGGATTCCTTTGTTTACTCTTTAAATAATAATAAAAAACAATGTAGTGTTTTTGAAATGAATACATTCGAGTATTGTTGACGTTAAATATGCA
ATTTAGCTATTTTCAATATGAGAAATGCCTCGAAATATGAAAATTTGTATAGAGAGTAGTAATGATTTTGTGGTTTCTATAAAACTCTCTAATGTGTATA
CTCAACCATAACGAGTTGTCCGATGTGTATTTAGCAACTATCACTATAGTTAAAGAGAGAGAGTAATTAAGTCTT