ATIDB : The Arabidopsis thaliana Integrated Database

Home Genome Browser BLAST Gene Traps Sub-Seq Contact

Names and Synonyms

AT1G80920.1
AT1G80920
F23A5.28
F23A5_28

Gene Ontology Terms

GO:0006457 [AMIGO Graph]
Term : biological_process, protein folding
Definition : The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

GO:0009507 [AMIGO Graph]
Term : cellular_component, chloroplast
Definition : A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.

MIPS Functional Catalogue Classifications

[99] UNCLASSIFIED PROTEINS


Gene Predictions [*]

Functional Class Prediction Accuracy (%age) Predicted by rule
mfc:04.05.01.04 transcriptional control 86/111 77.48 [Interpro mipsmanual 4 - Rule28]
mfc:04.05.01.04 transcriptional control 86/95 90.53 [Hom mipsmanual 4 - Rule11]
[GO:0003700] transcription factor activity 264/331 79.76 [Composite GOall 4 - Rule231]
[GO:0003700] transcription factor activity 239/282 84.75 [Composite GOmanual 4 - Rule93]


Gene Insertions

Flanking Sequence : T-DNA_LB.SALK_024617.40.35.x [Graphical View|Text]
Location : chromosome 1, base 30408772-30408773
Mapping Score 3 [see FAQ]

Flanking Sequence : T-DNA_LB.T-DNA.SAIL_70_D10.v1 [Graphical View|Text]
Location : chromosome 1, base 30408570-30408571
Mapping Score 5 [see FAQ]


Design Validation Primers

Automatically design primers for insert validation

InterProScan results

IPR003095 Heat shock protein DnaJ [ FPrintScan, DNAJPROTEIN, PR00625, score, 6.5e-09] IPR003095 Heat shock protein DnaJ [ FPrintScan, DNAJPROTEIN, PR00625, score, 6.5e-09] IPR001623 Heat shock protein DnaJ, N-terminal [ HMMSmart, no description, SM00271, score, 9.4e-19] IPR001623 Heat shock protein DnaJ, N-terminal [ ProfileScan, DNAJ_2, PS50076, score, 13.572] IPR001623 Heat shock protein DnaJ, N-terminal [ superfamily, Chaperone J-domain, SSF46565, score, 1.6e-17]
Sequences

AT1G80920.1 Sequences

AT1G80920.1, Protein sequence 163 amino acids
MTIALTIGGNGFSGLPGSSFSSSSSSFRLKNSRRKNTKMLNRSKVVCSSSSSVMDPYKTL
KIRPDSSEYEVKKAFRQLAKKYHPDVCRGSNCGVQFQTINEAYDIVLKQIKNQMEGTEEF
EPFDVYDEGLNGMNDPDCDTWEEWMGWEGAGTRDYSSHVNPYA*
AT1G80920.1 Sequence 1042 bases
ATTAAATCCTAAAATCCATTATTGATTGAATCTTCGAGTTACCAACAAAAAAAAAACTCTCCTTTATTTCAGTCTTCTTTTACAAATCATAATCTTCTCT
TTGATTCCATCTTGTGAACCACCGGCATAAGAAAATATGACAATTGCTTTAACGATCGGAGGAAACGGGTTTTCGGGTCTACCAGGATCGTCGTTTTCTT
CATCATCTTCGTCGTTTCGATTAAAAAACAGCAGAAGAAAGAACACGAAGATGCTCAACAGATCAAAAGTCGTTTGTTCTTCTTCATCTTCTGTAATGGA
TCCGTATAAGACTCTTAAGATCCGACCCGATTCATCTGAATACGAGGTCAAGAAAGCTTTCAGACAACTCGCTAAAAAGGTTTGACCTTTTGTTTAGCTC
AATCATCTTAGATCTGGGTTTTTAAAATTTGACATCTTTCTGATCGATTTTGATTTGATTGTTGCAGTATCATCCTGATGTTTGTAGAGGAAGCAATTGT
GGGGTACAGTTTCAGACAATTAACGAAGCTTACGATGTAAGCGTGTGCTTATGAAAGCTAACTATGCTTTTTGGTTAACTTAAAACAGATTTAAATTCGC
TTTTGTAATGAAAATTGATCTCTTTGTTTTTTTTTCTTTGAAGATTGTGTTGAAGCAAATTAAAAATCAGATGGAAGGGACGGAGGAATTTGAGCCGTTC
GATGTATACGACGAGGGATTGAACGGAATGAATGATCCAGATTGCGACACGTGGGAAGAATGGATGGGATGGGAGGGAGCAGGAACCCGTGATTACTCCT
CTCACGTTAATCCTTACGCTTGATAAACGAATGATTTCACTAATTAATTTCGAAAGAAATCATCCAAATGTGTATAAATAACAATCAGAGAGAGACTAAA
AGCACAACAATGTAAATAAGTGAAATTTGTCTCGGATAATGATTGCTTAAATGTGAATAAAGTAATCTCTCCTTTGTGTAAAAGCGTTTTTAGCTTTCCT
GATTTTGGAACTAATCTTTGAGATTAAGCGAAGGTTTTATTC
AT1G80920.1 Coding Sequence (CDS) 489 bases
ATGACAATTGCTTTAACGATCGGAGGAAACGGGTTTTCGGGTCTACCAGGATCGTCGTTTTCTTCATCATCTTCGTCGTTTCGATTAAAAAACAGCAGAA
GAAAGAACACGAAGATGCTCAACAGATCAAAAGTCGTTTGTTCTTCTTCATCTTCTGTAATGGATCCGTATAAGACTCTTAAGATCCGACCCGATTCATC
TGAATACGAGGTCAAGAAAGCTTTCAGACAACTCGCTAAAAAGTATCATCCTGATGTTTGTAGAGGAAGCAATTGTGGGGTACAGTTTCAGACAATTAAC
GAAGCTTACGATATTGTGTTGAAGCAAATTAAAAATCAGATGGAAGGGACGGAGGAATTTGAGCCGTTCGATGTATACGACGAGGGATTGAACGGAATGA
ATGATCCAGATTGCGACACGTGGGAAGAATGGATGGGATGGGAGGGAGCAGGAACCCGTGATTACTCCTCTCACGTTAATCCTTACGCTTGA
AT1G80920.1 cDNA Sequence 847 bases
ATTAAATCCTAAAATCCATTATTGATTGAATCTTCGAGTTACCAACAAAAAAAAAACTCTCCTTTATTTCAGTCTTCTTTTACAAATCATAATCTTCTCT
TTGATTCCATCTTGTGAACCACCGGCATAAGAAAATATGACAATTGCTTTAACGATCGGAGGAAACGGGTTTTCGGGTCTACCAGGATCGTCGTTTTCTT
CATCATCTTCGTCGTTTCGATTAAAAAACAGCAGAAGAAAGAACACGAAGATGCTCAACAGATCAAAAGTCGTTTGTTCTTCTTCATCTTCTGTAATGGA
TCCGTATAAGACTCTTAAGATCCGACCCGATTCATCTGAATACGAGGTCAAGAAAGCTTTCAGACAACTCGCTAAAAAGTATCATCCTGATGTTTGTAGA
GGAAGCAATTGTGGGGTACAGTTTCAGACAATTAACGAAGCTTACGATATTGTGTTGAAGCAAATTAAAAATCAGATGGAAGGGACGGAGGAATTTGAGC
CGTTCGATGTATACGACGAGGGATTGAACGGAATGAATGATCCAGATTGCGACACGTGGGAAGAATGGATGGGATGGGAGGGAGCAGGAACCCGTGATTA
CTCCTCTCACGTTAATCCTTACGCTTGATAAACGAATGATTTCACTAATTAATTTCGAAAGAAATCATCCAAATGTGTATAAATAACAATCAGAGAGAGA
CTAAAAGCACAACAATGTAAATAAGTGAAATTTGTCTCGGATAATGATTGCTTAAATGTGAATAAAGTAATCTCTCCTTTGTGTAAAAGCGTTTTTAGCT
TTCCTGATTTTGGAACTAATCTTTGAGATTAAGCGAAGGTTTTATTC