Arabidopsis thaliana genome (includes TAIR genome version 6, Gene Ontology July 2006 and Brassica homologies)

Showing 21 bp from 5, positions 6,898,068 to 6,898,088

Instructions  Instructions Search using a sequence name, gene name, locus, oligonucleotide (15 bp minimum), or other landmark. The wildcard character * is allowed. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position. Examples: 1, 2, 3, 4, 5, M, C, 1:97,000..117,000, 2:102,000..112,000, 1:11127000..11147000, At2g26800.1, apetala1, homeotic, flowering, CEN1, FCA, F4N2, F4N*, MGT_3.6639*, MGT*6639*, CGAATTCAATAGAATG, CGAATTCAATAGAAT, RNA:*, JAtY57D19, KBrB017B11, CX190453, GO:0005215.

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Landmark or Region:	Reports & Analysis: Annotate Restriction Sites Download Decorated FASTA File Download Sequence File Find Short Oligos
Data Source Arabidopsis thaliana genome (includes TAIR genome version 6, Gene Ontology July 2006 and Brassica homologies) Development version of ATIDB for testing new features. Data could be wrong. Better use the production release.	Scroll/Zoom:    Show 1 Mbp Show 500 kbp Show 200 kbp Show 100 kbp Show 40 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp Show 21 bp    Flip

 Overview

 Overview

 Details

 Details

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 Tracks

 Tracks

 Analysis

 Analysis

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Restriction Sites

 Brassica homologues

 Brassica homologues

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Homologous Brassica BAC clones	Homologous Brassica ESTs
Homologous Brassica BACends	Homologous Brassica GSSs

 General

 General

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6-frame-translation	DNA/GC Content	Insertions in Columbia	Microarray ATH1-121501 probes	Transcript
Arabidopsis ESTs and cDNAs	Gene Region (Transcription Unit)	Insertions in Landsberg erecta	Non-protein coding genes (RNA Genes)	Untranslated regions of protein coding genes
CATMA primers	Gene Traps with GUS patterns	Insertions in Wassilewskija	overview
Clone sequence regions	Insertions in all ecotypes (T-DNA or transposon flanking sequence)	JAtY Clone Library	Pseudogenes

 MPSS

 MPSS

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MPSS flower (Lu et al/Science/2005)

MPSS seed 1

MPSS seed 2

 Methylation data

 Methylation data

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HMBD col BU/UB	mCIP col/ddc BU	mCIP ddc BU/UB	mCIP met1 BU/UB
mCIP col BU/UB	mCIP col/met1 BU	mCIP ddc/col BU	mCIP met1/col BU

 External Annotation Tracks

 External Annotation Tracks

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 Display Settings

Image Width 450 640 800 1024 1280 1600	Key position Between Beneath Left Right	Track Name Table Alphabetic Varying
Highlight feature(s) (feature1 feature2...)	Highlight regions (region1:start..end region2:start..end)	Show grid

 Add your own tracks

 Add your own tracks

Upload your own annotations: [Help] [search_results]      Last modified Tue Sep 7 15:26:43 2010. Annotated landmarks: cattctattgaattcg Upload a file     Add remote annotations: [Help] Enter Remote Annotation URL

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